[2025-04-10 17:03:05,741] multiqc [DEBUG ] This is MultiQC v1.12 [2025-04-10 17:03:05,741] multiqc [DEBUG ] No MultiQC config found: /opt/anaconda/anaconda3/lib/python3.9/site-packages/multiqc_config.yaml [2025-04-10 17:03:05,741] multiqc [DEBUG ] No MultiQC config found: /home/shared/8TB_HDD_02/rendavis/.multiqc_config.yaml [2025-04-10 17:03:05,741] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2025-04-10 17:03:05,741] multiqc [DEBUG ] Command used: /opt/anaconda/anaconda3/bin/multiqc . [2025-04-10 17:03:06,300] multiqc [WARNING] MultiQC Version v1.28 now available! [2025-04-10 17:03:06,300] multiqc [DEBUG ] Command : /opt/anaconda/anaconda3/bin/multiqc . [2025-04-10 17:03:06,300] multiqc [DEBUG ] Working dir : /home/shared/8TB_HDD_02/rendavis/renee-myco/project/output [2025-04-10 17:03:06,300] multiqc [DEBUG ] Template : default [2025-04-10 17:03:06,300] multiqc [DEBUG ] Running Python 3.9.7 (default, Sep 16 2021, 13:09:58) [GCC 7.5.0] [2025-04-10 17:03:06,301] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, pbmarkdup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, checkqc, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype, whatshap [2025-04-10 17:03:06,301] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmpn326rg9t [2025-04-10 17:03:06,391] multiqc [INFO ] Search path : /home/shared/8TB_HDD_02/rendavis/renee-myco/project/output [2025-04-10 17:03:06,412] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: F1B-KM40_R1_001_fastqc.html [2025-04-10 17:03:06,412] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: F1B-KM40_R1_001_fastqc.html [2025-04-10 17:03:06,413] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: F1B-KM40_R1_001_fastqc.html [2025-04-10 17:03:06,414] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: F1B-KM40_R1_001_fastqc.html [2025-04-10 17:03:06,414] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: F1B-KM40_R1_001_fastqc.html [2025-04-10 17:03:06,414] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: F1B-KM40_R1_001_fastqc.html [2025-04-10 17:03:06,414] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: F1B-KM40_R1_001_fastqc.html [2025-04-10 17:03:06,414] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: F1B-KM40_R1_001_fastqc.html [2025-04-10 17:03:06,414] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: F1B-KM40_R1_001_fastqc.html [2025-04-10 17:03:06,414] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: F1B-KM40_R1_001_fastqc.html [2025-04-10 17:03:06,436] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: F1B-KM40_R1_001_fastqc.html [2025-04-10 17:03:06,440] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: F2R-KM41_R1_001_fastqc.html [2025-04-10 17:03:06,440] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: F2R-KM41_R1_001_fastqc.html [2025-04-10 17:03:06,440] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: F2R-KM41_R1_001_fastqc.html [2025-04-10 17:03:06,441] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: F2R-KM41_R1_001_fastqc.html [2025-04-10 17:03:06,441] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: F2R-KM41_R1_001_fastqc.html [2025-04-10 17:03:06,441] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: F2R-KM41_R1_001_fastqc.html [2025-04-10 17:03:06,441] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: F2R-KM41_R1_001_fastqc.html [2025-04-10 17:03:06,441] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: F2R-KM41_R1_001_fastqc.html [2025-04-10 17:03:06,441] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: F2R-KM41_R1_001_fastqc.html [2025-04-10 17:03:06,441] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: F2R-KM41_R1_001_fastqc.html [2025-04-10 17:03:06,462] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: F2R-KM41_R1_001_fastqc.html [2025-04-10 17:03:06,465] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: F2R-KM41_R2_001_fastqc.html [2025-04-10 17:03:06,466] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: F2R-KM41_R2_001_fastqc.html [2025-04-10 17:03:06,466] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: F2R-KM41_R2_001_fastqc.html [2025-04-10 17:03:06,467] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: F2R-KM41_R2_001_fastqc.html [2025-04-10 17:03:06,467] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: F2R-KM41_R2_001_fastqc.html [2025-04-10 17:03:06,467] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: F2R-KM41_R2_001_fastqc.html [2025-04-10 17:03:06,467] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: F2R-KM41_R2_001_fastqc.html [2025-04-10 17:03:06,467] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: F2R-KM41_R2_001_fastqc.html [2025-04-10 17:03:06,467] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: F2R-KM41_R2_001_fastqc.html [2025-04-10 17:03:06,467] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: F2R-KM41_R2_001_fastqc.html [2025-04-10 17:03:06,487] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: F2R-KM41_R2_001_fastqc.html [2025-04-10 17:03:06,490] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: F1B-KM40_R2_001_fastqc.html [2025-04-10 17:03:06,491] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: F1B-KM40_R2_001_fastqc.html [2025-04-10 17:03:06,491] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: F1B-KM40_R2_001_fastqc.html [2025-04-10 17:03:06,492] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: F1B-KM40_R2_001_fastqc.html [2025-04-10 17:03:06,492] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: F1B-KM40_R2_001_fastqc.html [2025-04-10 17:03:06,492] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: F1B-KM40_R2_001_fastqc.html [2025-04-10 17:03:06,492] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: F1B-KM40_R2_001_fastqc.html [2025-04-10 17:03:06,492] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: F1B-KM40_R2_001_fastqc.html [2025-04-10 17:03:06,492] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: F1B-KM40_R2_001_fastqc.html [2025-04-10 17:03:06,492] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: F1B-KM40_R2_001_fastqc.html [2025-04-10 17:03:06,514] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: F1B-KM40_R2_001_fastqc.html [2025-04-10 17:03:06,700] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2025-04-10 17:03:06,700] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2025-04-10 17:03:06,963] multiqc.modules.fastqc.fastqc [INFO ] Found 4 reports [2025-04-10 17:03:07,043] multiqc [INFO ] Compressing plot data [2025-04-10 17:03:07,102] multiqc [INFO ] Report : multiqc_report.html [2025-04-10 17:03:07,102] multiqc [INFO ] Data : multiqc_data [2025-04-10 17:03:07,102] multiqc [DEBUG ] Moving data file from '/tmp/tmpn326rg9t/multiqc_data' to '/home/shared/8TB_HDD_02/rendavis/renee-myco/project/output/multiqc_data' [2025-04-10 17:03:07,161] multiqc [INFO ] MultiQC complete