[2025-04-10 17:02:09,810] multiqc [DEBUG ] This is MultiQC v1.12 [2025-04-10 17:02:09,810] multiqc [DEBUG ] No MultiQC config found: /opt/anaconda/anaconda3/lib/python3.9/site-packages/multiqc_config.yaml [2025-04-10 17:02:09,810] multiqc [DEBUG ] No MultiQC config found: /home/shared/8TB_HDD_02/rendavis/.multiqc_config.yaml [2025-04-10 17:02:09,810] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2025-04-10 17:02:09,810] multiqc [DEBUG ] Command used: /opt/anaconda/anaconda3/bin/multiqc . [2025-04-10 17:02:10,490] multiqc [WARNING] MultiQC Version v1.28 now available! [2025-04-10 17:02:10,490] multiqc [DEBUG ] Command : /opt/anaconda/anaconda3/bin/multiqc . [2025-04-10 17:02:10,490] multiqc [DEBUG ] Working dir : /home/shared/8TB_HDD_02/rendavis/renee-myco/project [2025-04-10 17:02:10,490] multiqc [DEBUG ] Template : default [2025-04-10 17:02:10,490] multiqc [DEBUG ] Running Python 3.9.7 (default, Sep 16 2021, 13:09:58) [GCC 7.5.0] [2025-04-10 17:02:10,491] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, pbmarkdup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, checkqc, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype, whatshap [2025-04-10 17:02:10,491] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmp1wenklid [2025-04-10 17:02:10,943] multiqc [INFO ] Search path : /home/shared/8TB_HDD_02/rendavis/renee-myco/project [2025-04-10 17:02:11,066] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 02-gettingstarted.qmd [2025-04-10 17:02:11,067] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: 02-gettingstarted.qmd [2025-04-10 17:02:11,075] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: F1B-KM40_R1_001_fastqc.html [2025-04-10 17:02:11,076] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: F1B-KM40_R1_001_fastqc.html [2025-04-10 17:02:11,076] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: F1B-KM40_R1_001_fastqc.html [2025-04-10 17:02:11,077] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: F1B-KM40_R1_001_fastqc.html [2025-04-10 17:02:11,077] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: F1B-KM40_R1_001_fastqc.html [2025-04-10 17:02:11,077] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: F1B-KM40_R1_001_fastqc.html [2025-04-10 17:02:11,077] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: F1B-KM40_R1_001_fastqc.html [2025-04-10 17:02:11,077] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: F1B-KM40_R1_001_fastqc.html [2025-04-10 17:02:11,077] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: F1B-KM40_R1_001_fastqc.html [2025-04-10 17:02:11,077] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: F1B-KM40_R1_001_fastqc.html [2025-04-10 17:02:11,101] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: F1B-KM40_R1_001_fastqc.html [2025-04-10 17:02:11,104] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: F2R-KM41_R1_001_fastqc.html [2025-04-10 17:02:11,105] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: F2R-KM41_R1_001_fastqc.html [2025-04-10 17:02:11,105] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: F2R-KM41_R1_001_fastqc.html [2025-04-10 17:02:11,105] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: F2R-KM41_R1_001_fastqc.html [2025-04-10 17:02:11,105] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: F2R-KM41_R1_001_fastqc.html [2025-04-10 17:02:11,105] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: F2R-KM41_R1_001_fastqc.html [2025-04-10 17:02:11,105] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: F2R-KM41_R1_001_fastqc.html [2025-04-10 17:02:11,105] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: F2R-KM41_R1_001_fastqc.html [2025-04-10 17:02:11,105] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: F2R-KM41_R1_001_fastqc.html [2025-04-10 17:02:11,105] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: F2R-KM41_R1_001_fastqc.html [2025-04-10 17:02:11,130] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: F2R-KM41_R1_001_fastqc.html [2025-04-10 17:02:11,134] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: F2R-KM41_R2_001_fastqc.html [2025-04-10 17:02:11,134] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: F2R-KM41_R2_001_fastqc.html [2025-04-10 17:02:11,134] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: F2R-KM41_R2_001_fastqc.html [2025-04-10 17:02:11,135] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: F2R-KM41_R2_001_fastqc.html [2025-04-10 17:02:11,135] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: F2R-KM41_R2_001_fastqc.html [2025-04-10 17:02:11,135] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: F2R-KM41_R2_001_fastqc.html [2025-04-10 17:02:11,135] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: F2R-KM41_R2_001_fastqc.html [2025-04-10 17:02:11,135] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: F2R-KM41_R2_001_fastqc.html [2025-04-10 17:02:11,135] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: F2R-KM41_R2_001_fastqc.html [2025-04-10 17:02:11,135] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: F2R-KM41_R2_001_fastqc.html [2025-04-10 17:02:11,157] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: F2R-KM41_R2_001_fastqc.html [2025-04-10 17:02:11,161] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: F1B-KM40_R2_001_fastqc.html [2025-04-10 17:02:11,161] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: F1B-KM40_R2_001_fastqc.html [2025-04-10 17:02:11,161] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: F1B-KM40_R2_001_fastqc.html [2025-04-10 17:02:11,162] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: F1B-KM40_R2_001_fastqc.html [2025-04-10 17:02:11,162] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: F1B-KM40_R2_001_fastqc.html [2025-04-10 17:02:11,162] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: F1B-KM40_R2_001_fastqc.html [2025-04-10 17:02:11,162] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: F1B-KM40_R2_001_fastqc.html [2025-04-10 17:02:11,162] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: F1B-KM40_R2_001_fastqc.html [2025-04-10 17:02:11,162] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: F1B-KM40_R2_001_fastqc.html [2025-04-10 17:02:11,162] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: F1B-KM40_R2_001_fastqc.html [2025-04-10 17:02:11,184] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: F1B-KM40_R2_001_fastqc.html [2025-04-10 17:02:18,253] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2025-04-10 17:02:18,261] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2025-04-10 17:02:18,574] multiqc.modules.fastqc.fastqc [INFO ] Found 4 reports [2025-04-10 17:02:18,693] multiqc [INFO ] Compressing plot data [2025-04-10 17:02:18,772] multiqc [INFO ] Report : multiqc_report.html [2025-04-10 17:02:18,772] multiqc [INFO ] Data : multiqc_data [2025-04-10 17:02:18,772] multiqc [DEBUG ] Moving data file from '/tmp/tmp1wenklid/multiqc_data' to '/home/shared/8TB_HDD_02/rendavis/renee-myco/project/multiqc_data' [2025-04-10 17:02:18,978] multiqc [INFO ] MultiQC complete