Settings:
  Output files: "../analyses/05-hisat/GCA_032158295.1_02.*.ht2"
  Line rate: 7 (line is 128 bytes)
  Lines per side: 1 (side is 128 bytes)
  Offset rate: 4 (one in 16)
  FTable chars: 10
  Strings: unpacked
  Local offset rate: 3 (one in 8)
  Local fTable chars: 6
  Local sequence length: 57344
  Local sequence overlap between two consecutive indexes: 1024
  Endianness: little
  Actual local endianness: little
  Sanity checking: disabled
  Assertions: disabled
  Random seed: 0
  Sizeofs: void*:8, int:4, long:8, size_t:8
Input files DNA, FASTA:
  ../data/GCA_032158295.1_ASM3215829v1_genomic.fna
Reading reference sizes
  Time reading reference sizes: 00:00:02
Calculating joined length
Writing header
Reserving space for joined string
Joining reference sequences
  Time to join reference sequences: 00:00:02
  Time to read SNPs and splice sites: 00:00:00
Using parameters --bmax 2267891 --dcv 1024
  Doing ahead-of-time memory usage test
  Passed!  Constructing with these parameters: --bmax 2267891 --dcv 1024
Constructing suffix-array element generator
Converting suffix-array elements to index image
Allocating ftab, absorbFtab
Entering GFM loop
Exited GFM loop
fchr[A]: 0
fchr[C]: 147268959
fchr[G]: 241923747
fchr[T]: 336597128
fchr[$]: 483816647
Exiting GFM::buildToDisk()
Returning from initFromVector
Wrote 142634500 bytes to primary GFM file: ../analyses/05-hisat/GCA_032158295.1_02.1.ht2
Wrote 120954168 bytes to secondary GFM file: ../analyses/05-hisat/GCA_032158295.1_02.2.ht2
Re-opening _in1 and _in2 as input streams
Returning from GFM constructor
Returning from initFromVector
Wrote 213205341 bytes to primary GFM file: ../analyses/05-hisat/GCA_032158295.1_02.5.ht2
Wrote 123078258 bytes to secondary GFM file: ../analyses/05-hisat/GCA_032158295.1_02.6.ht2
Re-opening _in5 and _in5 as input streams
Returning from HGFM constructor
Headers:
    len: 483816647
    gbwtLen: 483816648
    nodes: 483816648
    sz: 120954162
    gbwtSz: 120954163
    lineRate: 7
    offRate: 4
    offMask: 0xfffffff0
    ftabChars: 10
    eftabLen: 0
    eftabSz: 0
    ftabLen: 1048577
    ftabSz: 4194308
    offsLen: 30238541
    offsSz: 120954164
    lineSz: 128
    sideSz: 128
    sideGbwtSz: 112
    sideGbwtLen: 448
    numSides: 1079948
    numLines: 1079948
    gbwtTotLen: 138233344
    gbwtTotSz: 138233344
    reverse: 0
    linearFM: Yes
Total time for call to driver() for forward index: 00:04:01