FastQCFastQC Report
Sat 9 Jan 2021
zr3644_12_R1_val_1.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filenamezr3644_12_R1_val_1.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47672940
Sequences flagged as poor quality0
Sequence length20-115
%GC18

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACACAAGTGGACATCTCGTATGCCGTCTTCTGCTTGAAAAGGGGGGGGG2430420.5098112262428119RNA PCR Primer, Index 20 (96% over 30bp)
GACACAAGTGGACATCGCGTATGCCGTCTTCTGCTTGAAAAGGGGGGGGG1193690.25039152189900604RNA PCR Primer, Index 41 (96% over 27bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)