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MultiQC: Summarize analysis results for multiple tools and samples in a single report
Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
Bioinformatics (2016)
doi: 10.1093/bioinformatics/btw354
PMID: 27312411

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About MultiQC

This report was generated using MultiQC, version 1.12

You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

MultiQC is published in Bioinformatics:

MultiQC: Summarize analysis results for multiple tools and samples in a single report
Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
Bioinformatics (2016)
doi: 10.1093/bioinformatics/btw354
PMID: 27312411

A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

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Report generated on 2025-03-13, 08:15 based on data in: /home/shared/16TB_HDD_01/sr320/github/project-oyster-oa/analyses/Haws-10

General Statistics

Showing ¹⁴⁴/₁₄₄ rows and ¹/₂ columns.

Sample Name	M Aligned	% Aligned
zr3644_10_L-1-0.6_PE_report	0.0	58.8%
zr3644_10_L0-0.4_PE_report	0.0	51.4%
zr3644_10_L0-0.6_PE_report	0.0	58.6%
zr3644_10_L0-0.8_PE_report	0.0	62.7%
zr3644_10_L0-1.0_PE_report	0.0	65.7%
zr3644_10_PE_report	32.6	62.8%
zr3644_11_L-1-0.6_PE_report	0.0	58.8%
zr3644_11_L0-0.4_PE_report	0.0	51.3%
zr3644_11_L0-0.6_PE_report	0.0	58.5%
zr3644_11_L0-0.8_PE_report	0.0	62.9%
zr3644_11_L0-1.0_PE_report	0.0	66.1%
zr3644_11_PE_report	35.2	62.8%
zr3644_12_L-1-0.6_PE_report	0.0	59.5%
zr3644_12_L0-0.4_PE_report	0.0	52.1%
zr3644_12_L0-0.6_PE_report	0.0	59.3%
zr3644_12_L0-0.8_PE_report	0.0	63.8%
zr3644_12_L0-1.0_PE_report	0.0	66.8%
zr3644_12_PE_report	29.9	63.8%
zr3644_13_L-1-0.6_PE_report	0.0	59.6%
zr3644_13_L0-0.4_PE_report	0.0	52.0%
zr3644_13_L0-0.6_PE_report	0.0	59.3%
zr3644_13_L0-0.8_PE_report	0.0	63.6%
zr3644_13_L0-1.0_PE_report	0.0	66.7%
zr3644_13_PE_report	33.7	63.1%
zr3644_14_L-1-0.6_PE_report	0.0	60.2%
zr3644_14_L0-0.4_PE_report	0.0	52.6%
zr3644_14_L0-0.6_PE_report	0.0	59.9%
zr3644_14_L0-0.8_PE_report	0.0	64.2%
zr3644_14_L0-1.0_PE_report	0.0	67.3%
zr3644_14_PE_report	23.1	63.6%
zr3644_15_L-1-0.6_PE_report	0.0	59.9%
zr3644_15_L0-0.4_PE_report	0.0	52.7%
zr3644_15_L0-0.6_PE_report	0.0	59.7%
zr3644_15_L0-0.8_PE_report	0.0	63.9%
zr3644_15_L0-1.0_PE_report	0.0	67.1%
zr3644_15_PE_report	37.0	63.3%
zr3644_16_L-1-0.6_PE_report	0.0	59.9%
zr3644_16_L0-0.4_PE_report	0.0	52.8%
zr3644_16_L0-0.6_PE_report	0.0	59.6%
zr3644_16_L0-0.8_PE_report	0.0	63.9%
zr3644_16_L0-1.0_PE_report	0.0	67.0%
zr3644_16_PE_report	32.0	63.6%
zr3644_17_L-1-0.6_PE_report	0.0	59.6%
zr3644_17_L0-0.4_PE_report	0.0	52.5%
zr3644_17_L0-0.6_PE_report	0.0	59.3%
zr3644_17_L0-0.8_PE_report	0.0	63.3%
zr3644_17_L0-1.0_PE_report	0.0	66.4%
zr3644_17_PE_report	36.1	62.9%
zr3644_18_L-1-0.6_PE_report	0.0	60.1%
zr3644_18_L0-0.4_PE_report	0.0	52.7%
zr3644_18_L0-0.6_PE_report	0.0	59.9%
zr3644_18_L0-0.8_PE_report	0.0	63.9%
zr3644_18_L0-1.0_PE_report	0.0	67.1%
zr3644_18_PE_report	32.5	63.7%
zr3644_19_L-1-0.6_PE_report	0.0	59.4%
zr3644_19_L0-0.4_PE_report	0.0	51.8%
zr3644_19_L0-0.6_PE_report	0.0	59.1%
zr3644_19_L0-0.8_PE_report	0.0	63.3%
zr3644_19_L0-1.0_PE_report	0.0	66.6%
zr3644_19_PE_report	30.8	63.4%
zr3644_1_L-1-0.6_PE_report	0.0	59.5%
zr3644_1_L0-0.4_PE_report	0.0	52.0%
zr3644_1_L0-0.6_PE_report	0.0	59.3%
zr3644_1_L0-0.8_PE_report	0.0	63.4%
zr3644_1_L0-1.0_PE_report	0.0	66.5%
zr3644_1_PE_report	32.4	63.5%
zr3644_20_L-1-0.6_PE_report	0.0	59.6%
zr3644_20_L0-0.4_PE_report	0.0	51.9%
zr3644_20_L0-0.6_PE_report	0.0	59.4%
zr3644_20_L0-0.8_PE_report	0.0	63.6%
zr3644_20_L0-1.0_PE_report	0.0	66.8%
zr3644_20_PE_report	33.6	63.0%
zr3644_21_L-1-0.6_PE_report	0.0	59.3%
zr3644_21_L0-0.4_PE_report	0.0	51.6%
zr3644_21_L0-0.6_PE_report	0.0	59.1%
zr3644_21_L0-0.8_PE_report	0.0	63.5%
zr3644_21_L0-1.0_PE_report	0.0	66.6%
zr3644_21_PE_report	31.9	63.2%
zr3644_22_L-1-0.6_PE_report	0.0	59.8%
zr3644_22_L0-0.4_PE_report	0.0	52.3%
zr3644_22_L0-0.6_PE_report	0.0	59.6%
zr3644_22_L0-0.8_PE_report	0.0	63.6%
zr3644_22_L0-1.0_PE_report	0.0	66.8%
zr3644_22_PE_report	29.9	63.6%
zr3644_23_L-1-0.6_PE_report	0.0	59.7%
zr3644_23_L0-0.4_PE_report	0.0	52.3%
zr3644_23_L0-0.6_PE_report	0.0	59.4%
zr3644_23_L0-0.8_PE_report	0.0	63.6%
zr3644_23_L0-1.0_PE_report	0.0	66.7%
zr3644_23_PE_report	25.3	63.5%
zr3644_24_L-1-0.6_PE_report	0.0	60.6%
zr3644_24_L0-0.4_PE_report	0.0	53.3%
zr3644_24_L0-0.6_PE_report	0.0	60.3%
zr3644_24_L0-0.8_PE_report	0.0	64.5%
zr3644_24_L0-1.0_PE_report	0.0	67.6%
zr3644_24_PE_report	33.3	63.7%
zr3644_2_L-1-0.6_PE_report	0.0	59.5%
zr3644_2_L0-0.4_PE_report	0.0	52.0%
zr3644_2_L0-0.6_PE_report	0.0	59.3%
zr3644_2_L0-0.8_PE_report	0.0	63.6%
zr3644_2_L0-1.0_PE_report	0.0	66.4%
zr3644_2_PE_report	34.5	62.7%
zr3644_3_L-1-0.6_PE_report	0.0	58.5%
zr3644_3_L0-0.4_PE_report	0.0	51.1%
zr3644_3_L0-0.6_PE_report	0.0	58.3%
zr3644_3_L0-0.8_PE_report	0.0	62.6%
zr3644_3_L0-1.0_PE_report	0.0	65.9%
zr3644_3_PE_report	24.4	62.7%
zr3644_4_L-1-0.6_PE_report	0.0	59.3%
zr3644_4_L0-0.4_PE_report	0.0	51.8%
zr3644_4_L0-0.6_PE_report	0.0	59.0%
zr3644_4_L0-0.8_PE_report	0.0	63.5%
zr3644_4_L0-1.0_PE_report	0.0	66.5%
zr3644_4_PE_report	31.2	63.2%
zr3644_5_L-1-0.6_PE_report	0.0	59.2%
zr3644_5_L0-0.4_PE_report	0.0	51.6%
zr3644_5_L0-0.6_PE_report	0.0	59.0%
zr3644_5_L0-0.8_PE_report	0.0	63.0%
zr3644_5_L0-1.0_PE_report	0.0	66.2%
zr3644_5_PE_report	27.8	63.1%
zr3644_6_L-1-0.6_PE_report	0.0	59.9%
zr3644_6_L0-0.4_PE_report	0.0	52.5%
zr3644_6_L0-0.6_PE_report	0.0	59.7%
zr3644_6_L0-0.8_PE_report	0.0	64.1%
zr3644_6_L0-1.0_PE_report	0.0	67.1%
zr3644_6_PE_report	33.8	63.5%
zr3644_7_L-1-0.6_PE_report	0.0	58.9%
zr3644_7_L0-0.4_PE_report	0.0	51.3%
zr3644_7_L0-0.6_PE_report	0.0	58.6%
zr3644_7_L0-0.8_PE_report	0.0	62.8%
zr3644_7_L0-1.0_PE_report	0.0	66.0%
zr3644_7_PE_report	51.4	63.0%
zr3644_8_L-1-0.6_PE_report	0.0	59.1%
zr3644_8_L0-0.4_PE_report	0.0	51.5%
zr3644_8_L0-0.6_PE_report	0.0	58.8%
zr3644_8_L0-0.8_PE_report	0.0	63.1%
zr3644_8_L0-1.0_PE_report	0.0	66.3%
zr3644_8_PE_report	26.6	62.9%
zr3644_9_L-1-0.6_PE_report	0.0	59.3%
zr3644_9_L0-0.4_PE_report	0.0	52.2%
zr3644_9_L0-0.6_PE_report	0.0	59.0%
zr3644_9_L0-0.8_PE_report	0.0	63.1%
zr3644_9_L0-1.0_PE_report	0.0	66.1%
zr3644_9_PE_report	29.9	62.9%

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Sort	Visible	Group	Column	Description	ID	Scale
\|\|		Bismark	M Aligned	Total Aligned Sequences (millions)	`aligned_reads`	read_count
\|\|		Bismark	% Aligned	Percent Aligned Sequences	`percent_aligned`	None

Bismark

Bismark is a tool to map bisulfite converted sequence reads and determine cytosine methylation states.DOI: 10.1093/bioinformatics/btr167.

Alignment Rates

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Strand Alignment

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

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Alignment Rates

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