95M_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.0 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 45337447 lines in total Total number of methylation call strings processed: 90674894 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1280619335 Total methylated C's in CpG context: 17973059 Total methylated C's in CHG context: 2308361 Total methylated C's in CHH context: 10779875 Total C to T conversions in CpG context: 131902624 Total C to T conversions in CHG context: 203076238 Total C to T conversions in CHH context: 914579178 C methylated in CpG context: 12.0% C methylated in non-CpG context: 1.2%