92M_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.0 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 50990977 lines in total Total number of methylation call strings processed: 101981954 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1365363766 Total methylated C's in CpG context: 17167094 Total methylated C's in CHG context: 2491962 Total methylated C's in CHH context: 11730259 Total C to T conversions in CpG context: 141471228 Total C to T conversions in CHG context: 216028023 Total C to T conversions in CHH context: 976475200 C methylated in CpG context: 10.8% C methylated in non-CpG context: 1.2%