270M_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.0 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 53432497 lines in total Total number of methylation call strings processed: 106864994 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1475364284 Total methylated C's in CpG context: 18922968 Total methylated C's in CHG context: 2774596 Total methylated C's in CHH context: 13014578 Total C to T conversions in CpG context: 155519548 Total C to T conversions in CHG context: 233694556 Total C to T conversions in CHH context: 1051438038 C methylated in CpG context: 10.8% C methylated in non-CpG context: 1.2%