95M_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 4459 lines in total Total number of methylation call strings processed: 8918 Final Cytosine Methylation Report ================================= Total number of C's analysed: 154301 Total methylated C's in CpG context: 2641 Total methylated C's in CHG context: 894 Total methylated C's in CHH context: 4028 Total C to T conversions in CpG context: 15491 Total C to T conversions in CHG context: 24159 Total C to T conversions in CHH context: 107088 C methylated in CpG context: 14.6% C methylated in non-CpG context: 3.6%