92M_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 4461 lines in total Total number of methylation call strings processed: 8922 Final Cytosine Methylation Report ================================= Total number of C's analysed: 147945 Total methylated C's in CpG context: 2314 Total methylated C's in CHG context: 791 Total methylated C's in CHH context: 3896 Total C to T conversions in CpG context: 14621 Total C to T conversions in CHG context: 23163 Total C to T conversions in CHH context: 103160 C methylated in CpG context: 13.7% C methylated in non-CpG context: 3.6%