240M_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.2 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 4419 lines in total Total number of methylation call strings processed: 8838 Final Cytosine Methylation Report ================================= Total number of C's analysed: 151549 Total methylated C's in CpG context: 2968 Total methylated C's in CHG context: 860 Total methylated C's in CHH context: 4418 Total C to T conversions in CpG context: 15641 Total C to T conversions in CHG context: 24321 Total C to T conversions in CHH context: 103341 C methylated in CpG context: 15.9% C methylated in non-CpG context: 4.0%