File Total Reads Aligned Reads Unaligned Reads Ambiguously Aligned Reads No Genomic Sequence Duplicate Reads (removed) Unique Reads (remaining) Total Cs Methylated CpGs Unmethylated CpGs Methylated chgs Unmethylated chgs Methylated CHHs Unmethylated CHHs 105M_1_bismark_bt2_pe.bam 10000 4864 3891 1245 0 232342 3329 24285 1061 36188 5219 162260 106M_1_bismark_bt2_pe.bam 10000 4749 4085 1166 0 223389 3541 22163 978 34962 4969 156776 107M_1_bismark_bt2_pe.bam 10000 4683 4176 1141 0 220153 3706 21884 969 34669 4954 153971 109M_1_bismark_bt2_pe.bam 10000 4798 4044 1158 0 224572 3691 22406 1044 35132 5048 157251 239M_1_bismark_bt2_pe.bam 10000 4744 4129 1127 0 222264 3400 22313 1077 34721 5122 155631 240M_1_bismark_bt2_pe.bam 10000 4702 3763 1535 0 230509 4488 24029 1111 37267 5772 157842 241M_1_bismark_bt2_pe.bam 10000 4848 3841 1311 0 233891 3364 24715 1098 37329 5135 162250 242M_1_bismark_bt2_pe.bam 10000 4686 3640 1674 1 241990 4593 28189 1148 40000 5709 162351 269M_1_bismark_bt2_pe.bam 10000 4794 4024 1182 0 223857 3349 22142 1076 34127 5153 158010 270M_1_bismark_bt2_pe.bam 10000 4693 3968 1339 0 222619 3502 23169 1006 35155 5216 154571 271M_1_bismark_bt2_pe.bam 10000 4741 4125 1134 0 222638 3690 21650 1068 34877 5109 156244 272M_1_bismark_bt2_pe.bam 10000 4842 3979 1179 0 228351 3601 22879 1106 35737 5278 159750 69M_1_bismark_bt2_pe.bam 10000 4712 3812 1476 0 232288 3941 25589 1059 36802 5145 159752 70M_1_bismark_bt2_pe.bam 10000 4695 3838 1467 0 231604 4137 24514 1067 36920 5374 159592 71M_1_bismark_bt2_pe.bam 10000 4886 3678 1436 0 237495 4118 25821 1121 38773 5226 162436 72M_1_bismark_bt2_pe.bam 10000 4849 3821 1330 0 234290 3538 25106 1043 37264 5338 162001 78M_1_bismark_bt2_pe.bam 10000 4840 3820 1340 0 231955 3786 24463 1088 36628 5223 160767 79M_1_bismark_bt2_pe.bam 10000 4847 4003 1150 0 228594 3558 22922 1068 35923 5409 159714 80M_1_bismark_bt2_pe.bam 10000 4794 3942 1264 0 229836 3767 23339 1157 36307 5143 160123 81M_1_bismark_bt2_pe.bam 10000 4747 3942 1311 0 226507 3555 23112 1070 35814 5220 157736 92M_1_bismark_bt2_pe.bam 10000 4721 4028 1251 0 222839 3379 22315 995 35113 4912 156125 93M_1_bismark_bt2_pe.bam 10000 4804 3993 1203 0 226753 3429 23082 1098 35564 5160 158420 94M_1_bismark_bt2_pe.bam 10000 4698 4044 1258 0 228646 3662 24292 1082 36221 5129 158260 95M_1_bismark_bt2_pe.bam 10000 4779 4001 1220 0 226101 3827 22755 1126 35692 5087 157614