Alignment Stats
| Sequence pairs analysed in total |
10000 |
| Paired-end alignments with a unique best hit |
4779 |
| Pairs without alignments under any condition |
4001 |
| Pairs that did not map uniquely |
1220 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
226101 |
| Methylated C's in CpG context |
3827 |
| Methylated C's in CHG context |
1126 |
| Methylated C's in CHH context |
5087 |
| Methylated C's in Unknown context |
285 |
| Unmethylated C's in CpG context |
22755 |
| Unmethylated C's in CHG context |
35692 |
| Unmethylated C's in CHH context |
157614 |
| Unmethylated C's in Unknown context |
1151 |
| Percentage methylation (CpG context) |
14.4% |
| Percentage methylation (CHG context) |
3.1% |
| Percentage methylation (CHH context) |
3.1% |
| Methylated C's in Unknown context |
19.8% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
2423 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
2356 |
original bottom strand |
|
|
