Alignment Stats
| Sequence pairs analysed in total |
10000 |
| Paired-end alignments with a unique best hit |
4698 |
| Pairs without alignments under any condition |
4044 |
| Pairs that did not map uniquely |
1258 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
228646 |
| Methylated C's in CpG context |
3662 |
| Methylated C's in CHG context |
1082 |
| Methylated C's in CHH context |
5129 |
| Methylated C's in Unknown context |
222 |
| Unmethylated C's in CpG context |
24292 |
| Unmethylated C's in CHG context |
36221 |
| Unmethylated C's in CHH context |
158260 |
| Unmethylated C's in Unknown context |
948 |
| Percentage methylation (CpG context) |
13.1% |
| Percentage methylation (CHG context) |
2.9% |
| Percentage methylation (CHH context) |
3.1% |
| Methylated C's in Unknown context |
19.0% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
2421 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
1 |
complementary to original bottom strand |
| OB |
2276 |
original bottom strand |
|
|
