Alignment Stats
| Sequence pairs analysed in total |
10000 |
| Paired-end alignments with a unique best hit |
4804 |
| Pairs without alignments under any condition |
3993 |
| Pairs that did not map uniquely |
1203 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
226753 |
| Methylated C's in CpG context |
3429 |
| Methylated C's in CHG context |
1098 |
| Methylated C's in CHH context |
5160 |
| Methylated C's in Unknown context |
271 |
| Unmethylated C's in CpG context |
23082 |
| Unmethylated C's in CHG context |
35564 |
| Unmethylated C's in CHH context |
158420 |
| Unmethylated C's in Unknown context |
964 |
| Percentage methylation (CpG context) |
12.9% |
| Percentage methylation (CHG context) |
3.0% |
| Percentage methylation (CHH context) |
3.2% |
| Methylated C's in Unknown context |
21.9% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
2422 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
2 |
complementary to original bottom strand |
| OB |
2380 |
original bottom strand |
|
|
