Alignment Stats
| Sequence pairs analysed in total |
10000 |
| Paired-end alignments with a unique best hit |
4747 |
| Pairs without alignments under any condition |
3942 |
| Pairs that did not map uniquely |
1311 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
226507 |
| Methylated C's in CpG context |
3555 |
| Methylated C's in CHG context |
1070 |
| Methylated C's in CHH context |
5220 |
| Methylated C's in Unknown context |
280 |
| Unmethylated C's in CpG context |
23112 |
| Unmethylated C's in CHG context |
35814 |
| Unmethylated C's in CHH context |
157736 |
| Unmethylated C's in Unknown context |
1000 |
| Percentage methylation (CpG context) |
13.3% |
| Percentage methylation (CHG context) |
2.9% |
| Percentage methylation (CHH context) |
3.2% |
| Methylated C's in Unknown context |
21.9% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
2427 |
original top strand |
| CTOT |
3 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
2317 |
original bottom strand |
|
|
