Alignment Stats
| Sequence pairs analysed in total |
10000 |
| Paired-end alignments with a unique best hit |
4840 |
| Pairs without alignments under any condition |
3820 |
| Pairs that did not map uniquely |
1340 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
231955 |
| Methylated C's in CpG context |
3786 |
| Methylated C's in CHG context |
1088 |
| Methylated C's in CHH context |
5223 |
| Methylated C's in Unknown context |
291 |
| Unmethylated C's in CpG context |
24463 |
| Unmethylated C's in CHG context |
36628 |
| Unmethylated C's in CHH context |
160767 |
| Unmethylated C's in Unknown context |
1049 |
| Percentage methylation (CpG context) |
13.4% |
| Percentage methylation (CHG context) |
2.9% |
| Percentage methylation (CHH context) |
3.1% |
| Methylated C's in Unknown context |
21.7% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
2434 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
2406 |
original bottom strand |
|
|
