Alignment Stats
| Sequence pairs analysed in total |
10000 |
| Paired-end alignments with a unique best hit |
4849 |
| Pairs without alignments under any condition |
3821 |
| Pairs that did not map uniquely |
1330 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
234290 |
| Methylated C's in CpG context |
3538 |
| Methylated C's in CHG context |
1043 |
| Methylated C's in CHH context |
5338 |
| Methylated C's in Unknown context |
243 |
| Unmethylated C's in CpG context |
25106 |
| Unmethylated C's in CHG context |
37264 |
| Unmethylated C's in CHH context |
162001 |
| Unmethylated C's in Unknown context |
1060 |
| Percentage methylation (CpG context) |
12.4% |
| Percentage methylation (CHG context) |
2.7% |
| Percentage methylation (CHH context) |
3.2% |
| Methylated C's in Unknown context |
18.6% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
2428 |
original top strand |
| CTOT |
1 |
complementary to original top strand |
| CTOB |
2 |
complementary to original bottom strand |
| OB |
2418 |
original bottom strand |
|
|
