Alignment Stats
| Sequence pairs analysed in total |
10000 |
| Paired-end alignments with a unique best hit |
4886 |
| Pairs without alignments under any condition |
3678 |
| Pairs that did not map uniquely |
1436 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
237495 |
| Methylated C's in CpG context |
4118 |
| Methylated C's in CHG context |
1121 |
| Methylated C's in CHH context |
5226 |
| Methylated C's in Unknown context |
281 |
| Unmethylated C's in CpG context |
25821 |
| Unmethylated C's in CHG context |
38773 |
| Unmethylated C's in CHH context |
162436 |
| Unmethylated C's in Unknown context |
1024 |
| Percentage methylation (CpG context) |
13.8% |
| Percentage methylation (CHG context) |
2.8% |
| Percentage methylation (CHH context) |
3.1% |
| Methylated C's in Unknown context |
21.5% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
2446 |
original top strand |
| CTOT |
1 |
complementary to original top strand |
| CTOB |
1 |
complementary to original bottom strand |
| OB |
2438 |
original bottom strand |
|
|
