Alignment Stats
| Sequence pairs analysed in total |
10000 |
| Paired-end alignments with a unique best hit |
4695 |
| Pairs without alignments under any condition |
3838 |
| Pairs that did not map uniquely |
1467 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
231604 |
| Methylated C's in CpG context |
4137 |
| Methylated C's in CHG context |
1067 |
| Methylated C's in CHH context |
5374 |
| Methylated C's in Unknown context |
234 |
| Unmethylated C's in CpG context |
24514 |
| Unmethylated C's in CHG context |
36920 |
| Unmethylated C's in CHH context |
159592 |
| Unmethylated C's in Unknown context |
998 |
| Percentage methylation (CpG context) |
14.4% |
| Percentage methylation (CHG context) |
2.8% |
| Percentage methylation (CHH context) |
3.3% |
| Methylated C's in Unknown context |
19.0% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
2354 |
original top strand |
| CTOT |
1 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
2340 |
original bottom strand |
|
|
