Alignment Stats
| Sequence pairs analysed in total |
10000 |
| Paired-end alignments with a unique best hit |
4712 |
| Pairs without alignments under any condition |
3812 |
| Pairs that did not map uniquely |
1476 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
232288 |
| Methylated C's in CpG context |
3941 |
| Methylated C's in CHG context |
1059 |
| Methylated C's in CHH context |
5145 |
| Methylated C's in Unknown context |
280 |
| Unmethylated C's in CpG context |
25589 |
| Unmethylated C's in CHG context |
36802 |
| Unmethylated C's in CHH context |
159752 |
| Unmethylated C's in Unknown context |
988 |
| Percentage methylation (CpG context) |
13.3% |
| Percentage methylation (CHG context) |
2.8% |
| Percentage methylation (CHH context) |
3.1% |
| Methylated C's in Unknown context |
22.1% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
2393 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
2319 |
original bottom strand |
|
|
