Alignment Stats
| Sequence pairs analysed in total |
10000 |
| Paired-end alignments with a unique best hit |
4842 |
| Pairs without alignments under any condition |
3979 |
| Pairs that did not map uniquely |
1179 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
228351 |
| Methylated C's in CpG context |
3601 |
| Methylated C's in CHG context |
1106 |
| Methylated C's in CHH context |
5278 |
| Methylated C's in Unknown context |
314 |
| Unmethylated C's in CpG context |
22879 |
| Unmethylated C's in CHG context |
35737 |
| Unmethylated C's in CHH context |
159750 |
| Unmethylated C's in Unknown context |
1004 |
| Percentage methylation (CpG context) |
13.6% |
| Percentage methylation (CHG context) |
3.0% |
| Percentage methylation (CHH context) |
3.2% |
| Methylated C's in Unknown context |
23.8% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
2388 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
2454 |
original bottom strand |
|
|
