Alignment Stats
| Sequence pairs analysed in total |
10000 |
| Paired-end alignments with a unique best hit |
4794 |
| Pairs without alignments under any condition |
4024 |
| Pairs that did not map uniquely |
1182 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
223857 |
| Methylated C's in CpG context |
3349 |
| Methylated C's in CHG context |
1076 |
| Methylated C's in CHH context |
5153 |
| Methylated C's in Unknown context |
274 |
| Unmethylated C's in CpG context |
22142 |
| Unmethylated C's in CHG context |
34127 |
| Unmethylated C's in CHH context |
158010 |
| Unmethylated C's in Unknown context |
1062 |
| Percentage methylation (CpG context) |
13.1% |
| Percentage methylation (CHG context) |
3.1% |
| Percentage methylation (CHH context) |
3.2% |
| Methylated C's in Unknown context |
20.5% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
2349 |
original top strand |
| CTOT |
1 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
2444 |
original bottom strand |
|
|
