Alignment Stats
| Sequence pairs analysed in total |
10000 |
| Paired-end alignments with a unique best hit |
4686 |
| Pairs without alignments under any condition |
3640 |
| Pairs that did not map uniquely |
1674 |
| Genomic sequence context not extractable (edges of chromosomes) |
1 |
|
|
Cytosine Methylation
| Total C's analysed |
241990 |
| Methylated C's in CpG context |
4593 |
| Methylated C's in CHG context |
1148 |
| Methylated C's in CHH context |
5709 |
| Methylated C's in Unknown context |
338 |
| Unmethylated C's in CpG context |
28189 |
| Unmethylated C's in CHG context |
40000 |
| Unmethylated C's in CHH context |
162351 |
| Unmethylated C's in Unknown context |
1056 |
| Percentage methylation (CpG context) |
14.0% |
| Percentage methylation (CHG context) |
2.8% |
| Percentage methylation (CHH context) |
3.4% |
| Methylated C's in Unknown context |
24.2% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
2328 |
original top strand |
| CTOT |
3 |
complementary to original top strand |
| CTOB |
1 |
complementary to original bottom strand |
| OB |
2353 |
original bottom strand |
|
|
