Alignment Stats
| Sequence pairs analysed in total |
10000 |
| Paired-end alignments with a unique best hit |
4702 |
| Pairs without alignments under any condition |
3763 |
| Pairs that did not map uniquely |
1535 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
230509 |
| Methylated C's in CpG context |
4488 |
| Methylated C's in CHG context |
1111 |
| Methylated C's in CHH context |
5772 |
| Methylated C's in Unknown context |
256 |
| Unmethylated C's in CpG context |
24029 |
| Unmethylated C's in CHG context |
37267 |
| Unmethylated C's in CHH context |
157842 |
| Unmethylated C's in Unknown context |
1087 |
| Percentage methylation (CpG context) |
15.7% |
| Percentage methylation (CHG context) |
2.9% |
| Percentage methylation (CHH context) |
3.5% |
| Methylated C's in Unknown context |
19.1% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
2412 |
original top strand |
| CTOT |
2 |
complementary to original top strand |
| CTOB |
2 |
complementary to original bottom strand |
| OB |
2286 |
original bottom strand |
|
|
