Alignment Stats
| Sequence pairs analysed in total |
10000 |
| Paired-end alignments with a unique best hit |
4683 |
| Pairs without alignments under any condition |
4176 |
| Pairs that did not map uniquely |
1141 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
220153 |
| Methylated C's in CpG context |
3706 |
| Methylated C's in CHG context |
969 |
| Methylated C's in CHH context |
4954 |
| Methylated C's in Unknown context |
302 |
| Unmethylated C's in CpG context |
21884 |
| Unmethylated C's in CHG context |
34669 |
| Unmethylated C's in CHH context |
153971 |
| Unmethylated C's in Unknown context |
944 |
| Percentage methylation (CpG context) |
14.5% |
| Percentage methylation (CHG context) |
2.7% |
| Percentage methylation (CHH context) |
3.1% |
| Methylated C's in Unknown context |
24.2% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
2347 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
2336 |
original bottom strand |
|
|
