Alignment Stats
| Sequence pairs analysed in total |
10000 |
| Paired-end alignments with a unique best hit |
4864 |
| Pairs without alignments under any condition |
3891 |
| Pairs that did not map uniquely |
1245 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
232342 |
| Methylated C's in CpG context |
3329 |
| Methylated C's in CHG context |
1061 |
| Methylated C's in CHH context |
5219 |
| Methylated C's in Unknown context |
249 |
| Unmethylated C's in CpG context |
24285 |
| Unmethylated C's in CHG context |
36188 |
| Unmethylated C's in CHH context |
162260 |
| Unmethylated C's in Unknown context |
993 |
| Percentage methylation (CpG context) |
12.1% |
| Percentage methylation (CHG context) |
2.8% |
| Percentage methylation (CHH context) |
3.1% |
| Methylated C's in Unknown context |
20.0% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
2460 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
1 |
complementary to original bottom strand |
| OB |
2403 |
original bottom strand |
|
|
