Status ../output/06.2-cod-RNAseq-alignment-genome/hisat2/100.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/107.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/108.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/109.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/10.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/110.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/117.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/118.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/119.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/11.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/120.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/121.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/127.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/128.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/129.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/12.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/131.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/137.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/138.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/139.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/13.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/140.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/147.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/148.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/149.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/150.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/18.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/19-G.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/19.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/19-S.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/1.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/20-G.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/20.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/20-S.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/21.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/28.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/29.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/2.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/30.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/31.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/37.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/38.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/39.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/3.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/40.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/41.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/47.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/48.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/49.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/4.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/50.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/57-G.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/57.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/57-S.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/58-G.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/58.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/58-S.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/59.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/5.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/60.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/67.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/68.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/69.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/70.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/78.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/79.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/80.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/83.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/88.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/90.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/91.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/97.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/98.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/99.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/RESUB-116.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/RESUB-156.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/RESUB-36.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/RESUB-76.sorted.bam ../output/06.2-cod-RNAseq-alignment-genome/hisat2/RESUB-94.sorted.bam Assigned 12400914 11488577 14027285 14912574 12588889 14928717 15002175 14712452 15907495 14751944 14045715 11816342 15764874 6574087 2853168 13617470 5881400 5432753 5730509 6631735 11606332 6410459 5707278 15348134 46996879 16276665 11381766 14469227 11940368 16431648 14165042 15556610 10618977 10857769 11296757 12751918 11879035 13796010 13211609 13066080 10976014 11321730 11575557 13228138 9843020 8809982 12321807 12666653 13305982 13755402 12656544 19135579 13504006 4868214 19614266 12445499 9054010 12685850 13199345 13446260 13739215 13482845 11556561 9908741 11808272 13009232 9604710 11305673 10938623 11034147 13326331 11876695 13134113 10827622 10955101 11476076 10612093 9637133 11646504 Unassigned_Unmapped 1368612 1633567 2915575 1954300 2082231 1655037 2087433 1527976 1687546 1722491 1660493 4844313 2117956 1064418 3612536 2008882 979113 943509 831863 805188 2309675 847997 923010 3436467 24763359 4429918 1956816 3194939 1603042 2343278 2061405 3200382 2080686 1629552 1825700 1652117 2322135 1590524 1850732 1311844 1533740 1935168 1874019 2295902 2256426 2119314 1711363 2555260 1871467 2169000 1782797 3155990 1632490 4435855 3186643 2369256 2540263 1675935 1900041 1971995 1976715 1890919 1782743 1513511 1738581 1627383 1468104 1348444 3842592 2376849 1996731 1571594 3098384 1932987 1259108 1194025 1106143 1620930 1313204 Unassigned_Read_Type 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Unassigned_Singleton 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Unassigned_MappingQuality 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Unassigned_Chimera 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Unassigned_FragmentLength 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Unassigned_Duplicate 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Unassigned_MultiMapping 3078280 2213721 4051875 3954642 3085990 3272840 3791014 3770135 3081451 3208004 3308365 2820466 3512510 1224354 8910326 3148729 1621134 1174375 1079179 1478833 2861521 1328280 1078175 3750203 47510123 4356938 2828881 2632743 2512972 4032205 2770536 2890313 3605425 2890047 3113258 2622552 3079035 2729797 2890318 2317118 1806957 4183929 2152544 3788774 4547087 7157152 2667757 2725884 2691760 2808732 2412306 3417822 2737849 4754492 3256468 2916785 2366315 2287953 3555328 3175300 3337960 3186809 2294990 2247281 3472600 2960710 2429942 2239445 3588509 3041827 3195293 2519999 5514709 3242326 2612459 2553480 2059122 1932660 2580250 Unassigned_Secondary 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Unassigned_NonSplit 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Unassigned_NoFeatures 925750 944303 1420888 1286978 1349750 919995 1120345 957589 796672 1214676 1144015 1271176 1462205 647800 1003440 1385669 534368 444567 514688 492353 1398007 520826 566993 1668648 7533790 1720801 1273473 1084285 1183923 927597 1271719 1097094 1349951 788327 1145752 1155578 1326569 860622 1224966 1469580 984673 1405017 1343699 1318597 1290734 1850187 1130369 1320731 1325221 1468272 1178971 1229528 1076987 1520908 1381666 1448387 1063033 1038308 1215538 1271713 1100293 1406926 1147526 1146850 1245436 968039 926805 1023323 1707530 1350348 1348232 1334440 1886396 1106752 783341 773928 690562 867043 719202 Unassigned_Overlapping_Length 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 Unassigned_Ambiguity 1282509 1168820 1760304 1504714 1655244 1456522 1608141 1404494 1534823 1531050 1535887 1165725 1551821 707757 354889 1430398 641581 557863 496048 702356 1259568 692747 631587 1711965 5153138 1985808 1237962 1846533 1242524 1786351 1496451 1777615 1157903 1385765 1216895 1451867 1264309 1264567 1421797 1163033 1246808 1626142 1438399 1379600 1232675 1072663 1399454 1449046 1526088 1267925 1383859 2325915 1446314 556911 2296658 1307210 1377997 1360859 1380771 1536585 1475956 1499188 1264377 1148539 1304975 1268599 1130076 1152486 1332883 1504982 1386155 1330904 1578319 1038806 1186892 1154656 996944 1173872 1257604