Status	../output/06.2-cod-RNAseq-alignment-genome/100.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/107.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/108.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/109.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/10.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/110.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/117.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/118.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/119.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/11.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/120.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/121.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/127.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/128.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/129.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/12.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/131.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/137.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/138.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/139.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/13.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/140.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/147.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/148.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/149.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/150.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/18.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/19-G.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/19.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/19-S.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/1.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/20-G.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/20.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/20-S.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/21.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/28.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/29.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/2.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/30.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/31.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/37.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/38.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/39.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/3.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/40.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/41.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/47.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/48.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/49.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/4.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/50.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/57-G.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/57.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/57-S.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/58-G.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/58.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/58-S.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/59.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/5.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/60.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/67.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/68.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/69.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/70.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/78.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/79.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/80.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/83.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/88.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/90.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/91.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/97.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/98.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/99.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/RESUB-116.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/RESUB-156.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/RESUB-36.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/RESUB-76.sorted.bam	../output/06.2-cod-RNAseq-alignment-genome/RESUB-94.sorted.bam
Assigned	12785884	11851525	14080082	15231173	12870827	15465906	15429859	15081945	16523114	15155871	14475732	11763976	15976812	6659412	2671177	13754085	5993480	5525084	5733285	6807522	11548888	6577903	5796024	15203087	47148428	16582080	11519670	14345804	12075354	16367643	14423095	15303048	10664805	10699955	11420526	12983935	11807229	14125489	13409757	13162134	11027236	11426770	11682057	13311366	9933536	8284903	12610946	12942663	13466176	13796524	12832153	19163066	13780768	3865255	19510315	12498968	8900828	12976245	13435072	13737507	14120493	13669203	11708441	10064696	12078556	13288089	9854137	11595086	10833097	11152940	13538803	12058202	13169988	10860632	11345911	11813894	10939275	9925831	12015596
Unassigned_Unmapped	1368612	1633567	2915575	1954300	2082231	1655037	2087433	1527976	1687546	1722491	1660493	4844313	2117956	1064418	3612536	2008882	979113	943509	831863	805188	2309675	847997	923010	3436467	24763359	4429918	1956816	3194939	1603042	2343278	2061405	3200382	2080686	1629552	1825700	1652117	2322135	1590524	1850732	1311844	1533740	1935168	1874019	2295902	2256426	2119314	1711363	2555260	1871467	2169000	1782797	3155990	1632490	4435855	3186643	2369256	2540263	1675935	1900041	1971995	1976715	1890919	1782743	1513511	1738581	1627383	1468104	1348444	3842592	2376849	1996731	1571594	3098384	1932987	1259108	1194025	1106143	1620930	1313204
Unassigned_Read_Type	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Unassigned_Singleton	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Unassigned_MappingQuality	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Unassigned_Chimera	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Unassigned_FragmentLength	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Unassigned_Duplicate	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Unassigned_MultiMapping	3078280	2213721	4051875	3954642	3085990	3272840	3791014	3770135	3081451	3208004	3308365	2820466	3512510	1224354	8910326	3148729	1621134	1174375	1079179	1478833	2861521	1328280	1078175	3750203	47510123	4356938	2828881	2632743	2512972	4032205	2770536	2890313	3605425	2890047	3113258	2622552	3079035	2729797	2890318	2317118	1806957	4183929	2152544	3788774	4547087	7157152	2667757	2725884	2691760	2808732	2412306	3417822	2737849	4754492	3256468	2916785	2366315	2287953	3555328	3175300	3337960	3186809	2294990	2247281	3472600	2960710	2429942	2239445	3588509	3041827	3195293	2519999	5514709	3242326	2612459	2553480	2059122	1932660	2580250
Unassigned_Secondary	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Unassigned_NonSplit	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Unassigned_NoFeatures	1323360	1316318	2447225	1869023	2155480	1324397	1678602	1463809	1153443	1775446	1692794	1905741	2143732	979914	1390545	2102151	804254	701828	805354	747771	2210853	769919	821502	2728340	10025551	2474012	1865441	2463264	1785496	2242223	1883757	2540123	1999319	1901439	1717549	1838704	2168658	1365769	1916071	2047502	1563191	2251539	1976847	2075482	1778337	2858746	1606076	1780682	1969423	2166280	1816582	2722168	1613355	2889322	2898883	2109147	2026451	1562068	1782892	1892692	1604301	2056487	1686041	1613811	1663113	1463926	1324223	1360447	2539846	2106269	1974481	1844704	2771680	1661651	1148836	1167588	1008711	1274449	1162259
Unassigned_Overlapping_Length	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Unassigned_Ambiguity	499929	433857	681170	604070	567576	514931	622200	528781	562433	566353	557091	583526	658356	290318	149775	577301	259615	208271	202606	271151	504166	276210	288332	797320	2509828	927182	508090	590977	505965	535730	626360	588148	462707	430467	521329	536724	494026	429941	532544	489057	617068	674580	698751	539487	654556	589183	634608	713085	721692	528795	570639	805788	633184	191456	883392	592981	567761	546704	577690	624359	590670	663269	573982	525623	617014	493855	483231	525949	606093	630268	547434	639133	657160	450897	430587	423178	351613	477768	445455