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/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_RESUB-94.log -o /home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment [2024-04-29 22:55:02,405] multiqc [WARNING] MultiQC Version v1.21 now available! [2024-04-29 22:55:02,405] multiqc [DEBUG ] Working dir : /home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/code [2024-04-29 22:55:02,406] multiqc [DEBUG ] Template : default [2024-04-29 22:55:02,406] multiqc [DEBUG ] Running Python 3.10.10 | packaged by conda-forge | (main, Mar 24 2023, 20:08:06) [GCC 11.3.0] [2024-04-29 22:55:02,407] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, hifiasm, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, gopeaks, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dragen_fastqc, dedup, pbmarkdup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, umitools, bbmap, bismark, biscuit, diamond, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, cellranger, snpsplit, odgi, pangolin, nextclade, humid, kat, leehom, adapterRemoval, bbduk, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, motus, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, filtlong, prinseqplusplus, pychopper, porechop, pycoqc, minionqc, anglerfish, multivcfanalyzer, clusterflow, checkqc, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype, whatshap [2024-04-29 22:55:02,407] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmponw0x712 [2024-04-29 22:55:02,551] multiqc [INFO ] Search path : /home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_100.log [2024-04-29 22:55:02,551] multiqc [INFO ] Search path : 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[2024-04-29 22:55:02,552] multiqc [INFO ] Search path : /home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_39.log [2024-04-29 22:55:02,552] multiqc [INFO ] Search path : /home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_3.log [2024-04-29 22:55:02,552] multiqc [INFO ] Search path : /home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_40.log [2024-04-29 22:55:02,552] multiqc [INFO ] Search path : /home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_41.log [2024-04-29 22:55:02,552] multiqc [INFO ] Search path : /home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_47.log [2024-04-29 22:55:02,552] multiqc [INFO ] Search path : 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[2024-04-29 22:55:02,552] multiqc [INFO ] Search path : /home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_57-S.log [2024-04-29 22:55:02,552] multiqc [INFO ] Search path : /home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_58-G.log [2024-04-29 22:55:02,552] multiqc [INFO ] Search path : /home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_58.log [2024-04-29 22:55:02,552] multiqc [INFO ] Search path : /home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_58-S.log [2024-04-29 22:55:02,552] multiqc [INFO ] Search path : /home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_59.log [2024-04-29 22:55:02,552] multiqc [INFO ] Search path : 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[2024-04-29 22:55:02,552] multiqc [INFO ] Search path : /home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_78.log [2024-04-29 22:55:02,552] multiqc [INFO ] Search path : /home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_79.log [2024-04-29 22:55:02,552] multiqc [INFO ] Search path : /home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_80.log [2024-04-29 22:55:02,552] multiqc [INFO ] Search path : /home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_83.log [2024-04-29 22:55:02,552] multiqc [INFO ] Search path : /home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_88.log [2024-04-29 22:55:02,552] multiqc [INFO ] Search path : 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/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_RESUB-116.log [2024-04-29 22:55:02,552] multiqc [INFO ] Search path : /home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_RESUB-156.log [2024-04-29 22:55:02,552] multiqc [INFO ] Search path : /home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_RESUB-36.log [2024-04-29 22:55:02,552] multiqc [INFO ] Search path : /home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_RESUB-76.log [2024-04-29 22:55:02,552] multiqc [INFO ] Search path : /home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/kallisto/kallisto_quant_RESUB-94.log [2024-04-29 22:55:03,008] multiqc [DEBUG ] Summary of files that were skipped by the search: [skipped_module_specific_max_filesize: 395] [2024-04-29 22:55:03,260] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.7.1 [2024-04-29 22:55:03,260] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.7.1 [2024-04-29 22:55:03,260] multiqc [DEBUG ] No samples found: custom_content [2024-04-29 22:55:03,277] multiqc.modules.kallisto.kallisto [INFO ] Found 79 reports [2024-04-29 22:55:03,308] multiqc [INFO ] Compressing plot data [2024-04-29 22:55:03,315] multiqc [INFO ] Report : ../output/06-cod-RNAseq-alignment/multiqc_report.html [2024-04-29 22:55:03,315] multiqc [INFO ] Data : ../output/06-cod-RNAseq-alignment/multiqc_data [2024-04-29 22:55:03,315] multiqc [DEBUG ] Moving data file from '/tmp/tmponw0x712/multiqc_data' to '/home/shared/8TB_HDD_02/shedurkin/project-cod-temperature/output/06-cod-RNAseq-alignment/multiqc_data' [2024-04-29 22:55:03,371] multiqc [INFO ] MultiQC complete