diamond v2.0.4.142 (C) Max Planck Society for the Advancement of Science
Documentation, support and updates available at http://www.diamondsearch.org

#CPU threads: 28
Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
Temporary directory: 
Opening the database...  [0.346s]
Percentage range of top alignment score to report hits: 10
Reference = /gscratch/srlab/blastdbs/ncbi-nr-20200924/nr.dmnd
Sequences = 316065422
Letters = 113949932586
Block size = 8000000000
Opening the input file...  [0.042s]
Opening the output file...  [0.001s]
Loading query sequences...  [6.34s]
Masking queries...  [2.773s]
Building query seed set...  [0.072s]
Algorithm: Double-indexed
Building query histograms...  [0.854s]
Allocating buffers...  [0s]
Loading reference sequences...  [124.933s]
Masking reference...  [18.834s]
Initializing temporary storage...  [0.028s]
Building reference histograms...  [7.488s]
Allocating buffers...  [0s]
Processing query block 1, reference block 1/15, shape 1/2.
Building reference seed array...  [6.652s]
Building query seed array...  [0.608s]
Computing hash join...  [9.426s]
Building seed filter...  [0.329s]
Searching alignments...  [11.845s]
Processing query block 1, reference block 1/15, shape 2/2.
Building reference seed array...  [6.062s]
Building query seed array...  [0.571s]
Computing hash join...  [9.352s]
Building seed filter...  [0.322s]
Searching alignments...  [11.737s]
Deallocating buffers...  [0.205s]
Clearing query masking...  [0.238s]
Opening temporary output file...  [0.001s]
Computing alignments...  [104.368s]
Deallocating reference...  [0.038s]
Loading reference sequences...  [15.774s]
Masking reference...  [19.693s]
Initializing temporary storage...  [0.01s]
Building reference histograms...  [7.044s]
Allocating buffers...  [0s]
Processing query block 1, reference block 2/15, shape 1/2.
Building reference seed array...  [6.563s]
Building query seed array...  [0.582s]
Computing hash join...  [9.444s]
Building seed filter...  [0.33s]
Searching alignments...  [11.961s]
Processing query block 1, reference block 2/15, shape 2/2.
Building reference seed array...  [6.189s]
Building query seed array...  [0.57s]
Computing hash join...  [9.311s]
Building seed filter...  [0.327s]
Searching alignments...  [12.561s]
Deallocating buffers...  [0.205s]
Clearing query masking...  [0.23s]
Opening temporary output file...  [0.001s]
Computing alignments...  [103.396s]
Deallocating reference...  [0.038s]
Loading reference sequences...  [15.977s]
Masking reference...  [19.688s]
Initializing temporary storage...  [0.009s]
Building reference histograms...  [7.509s]
Allocating buffers...  [0s]
Processing query block 1, reference block 3/15, shape 1/2.
Building reference seed array...  [6.609s]
Building query seed array...  [0.586s]
Computing hash join...  [9.429s]
Building seed filter...  [0.421s]
Searching alignments...  [12.038s]
Processing query block 1, reference block 3/15, shape 2/2.
Building reference seed array...  [6.122s]
Building query seed array...  [0.554s]
Computing hash join...  [9.289s]
Building seed filter...  [0.327s]
Searching alignments...  [11.821s]
Deallocating buffers...  [0.212s]
Clearing query masking...  [0.259s]
Opening temporary output file...  [0.002s]
Computing alignments...  [92.906s]
Deallocating reference...  [0.039s]
Loading reference sequences...  [16.754s]
Masking reference...  [19.579s]
Initializing temporary storage...  [0.009s]
Building reference histograms...  [7.136s]
Allocating buffers...  [0s]
Processing query block 1, reference block 4/15, shape 1/2.
Building reference seed array...  [6.693s]
Building query seed array...  [0.727s]
Computing hash join...  [9.538s]
Building seed filter...  [0.356s]
Searching alignments...  [11.983s]
Processing query block 1, reference block 4/15, shape 2/2.
Building reference seed array...  [6.125s]
Building query seed array...  [0.567s]
Computing hash join...  [9.315s]
Building seed filter...  [0.327s]
Searching alignments...  [11.847s]
Deallocating buffers...  [0.209s]
Clearing query masking...  [0.242s]
Opening temporary output file...  [0.001s]
Computing alignments...  [105.566s]
Deallocating reference...  [0.039s]
Loading reference sequences...  [16.265s]
Masking reference...  [18.884s]
Initializing temporary storage...  [0.009s]
Building reference histograms...  [7.484s]
Allocating buffers...  [0s]
Processing query block 1, reference block 5/15, shape 1/2.
Building reference seed array...  [6.696s]
Building query seed array...  [0.599s]
Computing hash join...  [9.462s]
Building seed filter...  [0.365s]
Searching alignments...  [12.206s]
Processing query block 1, reference block 5/15, shape 2/2.
Building reference seed array...  [6.044s]
Building query seed array...  [0.564s]
Computing hash join...  [9.315s]
Building seed filter...  [0.331s]
Searching alignments...  [11.886s]
Deallocating buffers...  [0.206s]
Clearing query masking...  [0.229s]
Opening temporary output file...  [0.001s]
Computing alignments...  [104.833s]
Deallocating reference...  [0.038s]
Loading reference sequences...  [15.207s]
Masking reference...  [19.277s]
Initializing temporary storage...  [0.008s]
Building reference histograms...  [7.087s]
Allocating buffers...  [0s]
Processing query block 1, reference block 6/15, shape 1/2.
Building reference seed array...  [6.539s]
Building query seed array...  [0.612s]
Computing hash join...  [9.476s]
Building seed filter...  [0.354s]
Searching alignments...  [12.075s]
Processing query block 1, reference block 6/15, shape 2/2.
Building reference seed array...  [6.067s]
Building query seed array...  [0.57s]
Computing hash join...  [9.3s]
Building seed filter...  [0.335s]
Searching alignments...  [11.783s]
Deallocating buffers...  [0.206s]
Clearing query masking...  [0.228s]
Opening temporary output file...  [0.001s]
Computing alignments...  [93.167s]
Deallocating reference...  [0.039s]
Loading reference sequences...  [15.444s]
Masking reference...  [18.661s]
Initializing temporary storage...  [0.01s]
Building reference histograms...  [7.454s]
Allocating buffers...  [0s]
Processing query block 1, reference block 7/15, shape 1/2.
Building reference seed array...  [6.579s]
Building query seed array...  [0.581s]
Computing hash join...  [9.483s]
Building seed filter...  [0.331s]
Searching alignments...  [12.02s]
Processing query block 1, reference block 7/15, shape 2/2.
Building reference seed array...  [6.07s]
Building query seed array...  [0.569s]
Computing hash join...  [9.337s]
Building seed filter...  [0.325s]
Searching alignments...  [11.925s]
Deallocating buffers...  [0.209s]
Clearing query masking...  [0.227s]
Opening temporary output file...  [0.001s]
Computing alignments...  [101.7s]
Deallocating reference...  [0.04s]
Loading reference sequences...  [16.312s]
Masking reference...  [19.364s]
Initializing temporary storage...  [0.007s]
Building reference histograms...  [7.084s]
Allocating buffers...  [0s]
Processing query block 1, reference block 8/15, shape 1/2.
Building reference seed array...  [6.498s]
Building query seed array...  [0.584s]
Computing hash join...  [9.49s]
Building seed filter...  [0.328s]
Searching alignments...  [12.859s]
Processing query block 1, reference block 8/15, shape 2/2.
Building reference seed array...  [6.102s]
Building query seed array...  [0.572s]
Computing hash join...  [9.33s]
Building seed filter...  [0.331s]
Searching alignments...  [11.925s]
Deallocating buffers...  [0.234s]
Clearing query masking...  [0.267s]
Opening temporary output file...  [0.001s]
Computing alignments...  [103.259s]
Deallocating reference...  [0.039s]
Loading reference sequences...  [15.693s]
Masking reference...  [19.622s]
Initializing temporary storage...  [0.009s]
Building reference histograms...  [7.558s]
Allocating buffers...  [0s]
Processing query block 1, reference block 9/15, shape 1/2.
Building reference seed array...  [6.574s]
Building query seed array...  [0.58s]
Computing hash join...  [9.456s]
Building seed filter...  [0.339s]
Searching alignments...  [12.072s]
Processing query block 1, reference block 9/15, shape 2/2.
Building reference seed array...  [6.082s]
Building query seed array...  [0.552s]
Computing hash join...  [9.311s]
Building seed filter...  [0.329s]
Searching alignments...  [11.793s]
Deallocating buffers...  [0.241s]
Clearing query masking...  [0.255s]
Opening temporary output file...  [0.001s]
Computing alignments...  [95.244s]
Deallocating reference...  [0.038s]
Loading reference sequences...  [15.417s]
Masking reference...  [19.59s]
Initializing temporary storage...  [0.006s]
Building reference histograms...  [7.07s]
Allocating buffers...  [0s]
Processing query block 1, reference block 10/15, shape 1/2.
Building reference seed array...  [6.601s]
Building query seed array...  [0.646s]
Computing hash join...  [9.486s]
Building seed filter...  [0.364s]
Searching alignments...  [12.2s]
Processing query block 1, reference block 10/15, shape 2/2.
Building reference seed array...  [6.056s]
Building query seed array...  [0.558s]
Computing hash join...  [9.292s]
Building seed filter...  [0.326s]
Searching alignments...  [11.768s]
Deallocating buffers...  [0.206s]
Clearing query masking...  [0.231s]
Opening temporary output file...  [0.001s]
Computing alignments...  [94.614s]
Deallocating reference...  [0.039s]
Loading reference sequences...  [15.919s]
Masking reference...  [19.625s]
Initializing temporary storage...  [0.005s]
Building reference histograms...  [7.551s]
Allocating buffers...  [0s]
Processing query block 1, reference block 11/15, shape 1/2.
Building reference seed array...  [6.566s]
Building query seed array...  [0.577s]
Computing hash join...  [9.452s]
Building seed filter...  [0.335s]
Searching alignments...  [11.988s]
Processing query block 1, reference block 11/15, shape 2/2.
Building reference seed array...  [6.052s]
Building query seed array...  [0.568s]
Computing hash join...  [9.285s]
Building seed filter...  [0.328s]
Searching alignments...  [12.344s]
Deallocating buffers...  [0.207s]
Clearing query masking...  [0.23s]
Opening temporary output file...  [0.001s]
Computing alignments...  [102.754s]
Deallocating reference...  [0.038s]
Loading reference sequences...  [15.494s]
Masking reference...  [19.646s]
Initializing temporary storage...  [0.011s]
Building reference histograms...  [7.09s]
Allocating buffers...  [0s]
Processing query block 1, reference block 12/15, shape 1/2.
Building reference seed array...  [6.558s]
Building query seed array...  [0.58s]
Computing hash join...  [9.438s]
Building seed filter...  [0.331s]
Searching alignments...  [13.053s]
Processing query block 1, reference block 12/15, shape 2/2.
Building reference seed array...  [6.102s]
Building query seed array...  [0.571s]
Computing hash join...  [9.298s]
Building seed filter...  [0.329s]
Searching alignments...  [11.714s]
Deallocating buffers...  [0.204s]
Clearing query masking...  [0.229s]
Opening temporary output file...  [0.001s]
Computing alignments...  [101.31s]
Deallocating reference...  [0.043s]
Loading reference sequences...  [15.893s]
Masking reference...  [19.607s]
Initializing temporary storage...  [0.012s]
Building reference histograms...  [7.469s]
Allocating buffers...  [0s]
Processing query block 1, reference block 13/15, shape 1/2.
Building reference seed array...  [6.517s]
Building query seed array...  [0.579s]
Computing hash join...  [9.47s]
Building seed filter...  [0.377s]
Searching alignments...  [11.911s]
Processing query block 1, reference block 13/15, shape 2/2.
Building reference seed array...  [6.042s]
Building query seed array...  [0.571s]
Computing hash join...  [9.387s]
Building seed filter...  [0.33s]
Searching alignments...  [11.799s]
Deallocating buffers...  [0.212s]
Clearing query masking...  [0.253s]
Opening temporary output file...  [0.002s]
Computing alignments...  [97.641s]
Deallocating reference...  [0.038s]
Loading reference sequences...  [15.604s]
Masking reference...  [18.629s]
Initializing temporary storage...  [0.009s]
Building reference histograms...  [7.06s]
Allocating buffers...  [0s]
Processing query block 1, reference block 14/15, shape 1/2.
Building reference seed array...  [6.495s]
Building query seed array...  [0.565s]
Computing hash join...  [9.443s]
Building seed filter...  [0.422s]
Searching alignments...  [12.101s]
Processing query block 1, reference block 14/15, shape 2/2.
Building reference seed array...  [6.156s]
Building query seed array...  [0.568s]
Computing hash join...  [9.33s]
Building seed filter...  [0.326s]
Searching alignments...  [11.85s]
Deallocating buffers...  [0.208s]
Clearing query masking...  [0.242s]
Opening temporary output file...  [0.001s]
Computing alignments...  [96.24s]
Deallocating reference...  [0.04s]
Loading reference sequences...  [4.011s]
Masking reference...  [4.729s]
Initializing temporary storage...  [0.01s]
Building reference histograms...  [1.92s]
Allocating buffers...  [0s]
Processing query block 1, reference block 15/15, shape 1/2.
Building reference seed array...  [1.598s]
Building query seed array...  [0.559s]
Computing hash join...  [2.834s]
Building seed filter...  [0.138s]
Searching alignments...  [3.551s]
Processing query block 1, reference block 15/15, shape 2/2.
Building reference seed array...  [1.51s]
Building query seed array...  [0.531s]
Computing hash join...  [2.819s]
Building seed filter...  [0.122s]
Searching alignments...  [3.502s]
Deallocating buffers...  [0.056s]
Clearing query masking...  [0.238s]
Opening temporary output file...  [0.001s]
Computing alignments...  [31.539s]
Deallocating reference...  [0.011s]
Loading reference sequences...  [0.033s]
Deallocating buffers...  [0.015s]
Joining output blocks...  [50.404s]
Deallocating queries...  [0.019s]
Loading query sequences...  [0s]
Closing the input file...  [0s]
Closing the output file...  [0.738s]
Closing the database file...  [0s]
Deallocating taxonomy...  [0s]
Total time = 3032.72s
Reported 7648952 pairwise alignments, 7648952 HSPs.
331509 queries aligned.
Logging program options...

Finished logging program options.


Logging system PATH.
Finished logging system PATH