[2021-06-15 21:46:05.905] [jointLog] [info] [Step 1 of 4] : counting k-mers
[2021-06-15 21:46:22.961] [jointLog] [info] Replaced 0 non-ATCG nucleotides
[2021-06-15 21:46:22.961] [jointLog] [info] Clipped poly-A tails from 112 transcripts
[2021-06-15 21:46:22.976] [jointLog] [info] Building rank-select dictionary and saving to disk
[2021-06-15 21:46:22.991] [jointLog] [info] done
[2021-06-15 21:46:22.992] [jointLog] [info] Writing sequence data to file . . . 
[2021-06-15 21:46:23.142] [jointLog] [info] done
[2021-06-15 21:46:23.153] [jointLog] [info] Building 32-bit suffix array (length of generalized text is 218,907,970)
[2021-06-15 21:46:23.484] [jointLog] [info] Building suffix array . . . 
[2021-06-15 21:48:37.086] [jointLog] [info] khash had 108,870,782 keys
[2021-06-15 21:48:37.086] [jointLog] [info] saving hash to disk . . . 
[2021-06-15 21:48:46.344] [jointLog] [info] done