Version   MEGAN Community Edition (version 6.21.5, built 5 May 2021)
Author(s) Daniel H. Huson
Copyright (C) 2021 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY.
This is free software, licensed under the terms of the GNU General Public License, Version 3.
Sources available at: https://github.com/husonlab/megan-ce
Java version: 14.0.1

Opening startup files
Loading ncbi.map: 2,302,807
Loading ncbi.tre: 2,302,811
Executing: open file='/home/sam/analyses/20210613_pcom_diamond_blastx_transcriptome/Trinity.fasta.daa2rma.rma6';
Info: Opened file 'Trinity.fasta.daa2rma.rma6' with 331,509 reads
Executing: set drawer=RectangularCladogram;
Executing: set drawer=RoundedPhylogram;
Executing: uncollapse nodes=subtree;
Executing: uncollapse nodes=subtree;
Executing: uncollapse nodes=subtree;
Executing: collapse nodes=top;
Executing: collapse nodes=top;
Executing: uncollapse nodes=selected;
Executing: uncollapse nodes=selected;
Executing: uncollapse nodes=subtree;
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/home/sam/analyses/20210613_pcom_diamond_blastx_transcriptome' outfile='%t_MEGAN-extractions.fasta' data=Taxonomy ids= 6073 allBelow=true;
Info: Number of reads written: 261540
Executing: show window=ExtractReads;
Executing: extract what=reads outdir='/home/sam/analyses/20210613_pcom_diamond_blastx_transcriptome' outfile='%t_MEGAN-extractions.fasta' data=Taxonomy ids= 33630 allBelow=true;
Info: Number of reads written: 40646