[2019-01-30 21:09:24.289] [jointLog] [info] parsing read library format
[2019-01-30 21:09:24.289] [jointLog] [info] There is 1 library.
[2019-01-30 21:09:24.350] [jointLog] [info] Loading Quasi index
[2019-01-30 21:09:24.350] [jointLog] [info] Loading 32-bit quasi index
[2019-01-30 21:09:24.747] [jointLog] [info] done
[2019-01-30 21:09:24.747] [jointLog] [info] Index contained 5838 targets
[2019-01-30 21:10:24.844] [fileLog] [info] 
At end of round 0
==================
Observed 24846918 total fragments (24846918 in most recent round)

[2019-01-30 21:10:24.843] [jointLog] [info] Computed 7374 rich equivalence classes for further processing
[2019-01-30 21:10:24.843] [jointLog] [info] Counted 2259062 total reads in the equivalence classes 
[2019-01-30 21:10:24.854] [jointLog] [warning] 0.00989258% of fragments were shorter than the k used to build the index (31).
If this fraction is too large, consider re-building the index with a smaller k.
The minimum read size found was 20.


[2019-01-30 21:10:24.855] [jointLog] [warning] Only 2259062 fragments were mapped, but the number of burn-in fragments was set to 5000000.
The effective lengths have been computed using the observed mappings.

[2019-01-30 21:10:24.855] [jointLog] [info] Mapping rate = 9.09192%

[2019-01-30 21:10:24.855] [jointLog] [info] finished quantifyLibrary()
[2019-01-30 21:10:24.855] [jointLog] [info] Starting optimizer
[2019-01-30 21:10:24.861] [jointLog] [info] Marked 0 weighted equivalence classes as degenerate
[2019-01-30 21:10:24.861] [jointLog] [info] iteration = 0 | max rel diff. = 556.404
[2019-01-30 21:10:24.882] [jointLog] [info] iteration = 100 | max rel diff. = 0.11871
[2019-01-30 21:10:24.897] [jointLog] [info] iteration = 200 | max rel diff. = 0.0618657
[2019-01-30 21:10:24.912] [jointLog] [info] iteration = 300 | max rel diff. = 0.0435088
[2019-01-30 21:10:24.927] [jointLog] [info] iteration = 400 | max rel diff. = 0.0267594
[2019-01-30 21:10:24.943] [jointLog] [info] iteration = 500 | max rel diff. = 0.0203618
[2019-01-30 21:10:24.960] [jointLog] [info] iteration = 600 | max rel diff. = 0.0172348
[2019-01-30 21:10:24.978] [jointLog] [info] iteration = 700 | max rel diff. = 0.0139803
[2019-01-30 21:10:24.995] [jointLog] [info] iteration = 800 | max rel diff. = 0.0121048
[2019-01-30 21:10:25.013] [jointLog] [info] iteration = 900 | max rel diff. = 0.0120494
[2019-01-30 21:10:25.030] [jointLog] [info] iteration = 1000 | max rel diff. = 0.0101032
[2019-01-30 21:10:25.033] [jointLog] [info] iteration = 1015 | max rel diff. = 0.00970086
[2019-01-30 21:10:25.033] [jointLog] [info] Finished optimizer
[2019-01-30 21:10:25.033] [jointLog] [info] writing output 

[2019-01-30 21:10:25.044] [jointLog] [warning] NOTE: Read Lib [( /dev/fd/63, /dev/fd/62 )] :

Greater than 5% of the fragments disagreed with the provided library type; check the file: bleached_K5_01/lib_format_counts.json for details