[2024-05-27 14:57:10,089] multiqc [DEBUG ] This is MultiQC v1.14 [2024-05-27 14:57:10,089] multiqc [DEBUG ] Command used: /home/sam/programs/mambaforge/bin/multiqc ../analyses/11-kallisto/ [2024-05-27 14:57:10,937] multiqc [WARNING] MultiQC Version v1.22.1 now available! [2024-05-27 14:57:10,937] multiqc [DEBUG ] Working dir : /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/code [2024-05-27 14:57:10,937] multiqc [DEBUG ] Template : default [2024-05-27 14:57:10,937] multiqc [DEBUG ] Running Python 3.10.10 | packaged by conda-forge | (main, Mar 24 2023, 20:08:06) [GCC 11.3.0] [2024-05-27 14:57:10,938] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, hifiasm, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, gopeaks, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dragen_fastqc, dedup, pbmarkdup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, umitools, bbmap, bismark, biscuit, diamond, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, cellranger, snpsplit, odgi, pangolin, nextclade, humid, kat, leehom, adapterRemoval, bbduk, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, motus, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, filtlong, prinseqplusplus, pychopper, porechop, pycoqc, minionqc, anglerfish, multivcfanalyzer, clusterflow, checkqc, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype, whatshap [2024-05-27 14:57:10,939] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmpmzllx9ev [2024-05-27 14:57:11,436] multiqc [INFO ] Search path : /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/11-kallisto [2024-05-27 14:57:31,630] multiqc [DEBUG ] Summary of files that were skipped by the search: [skipped_file_contents_search_errors: 10944] // [skipped_module_specific_max_filesize: 1101] // [skipped_no_match: 259] // [skipped_filesize_limit: 1] // [skipped_directory_fn_ignore_dirs: 1] [2024-05-27 14:57:32,537] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.7.1 [2024-05-27 14:57:32,538] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.7.1 [2024-05-27 14:57:32,538] multiqc [DEBUG ] No samples found: custom_content [2024-05-27 14:57:32,549] multiqc.modules.kallisto.kallisto [DEBUG ] Duplicate sample name found! Overwriting: PSC-71_R1_001 [2024-05-27 14:57:32,549] multiqc.modules.kallisto.kallisto [DEBUG ] Duplicate sample name found! Overwriting: PSC-64_R1_001 [2024-05-27 14:57:32,549] multiqc.modules.kallisto.kallisto [DEBUG ] Duplicate sample name found! Overwriting: PSC-42_R1_001 [2024-05-27 14:57:32,549] multiqc.modules.kallisto.kallisto [DEBUG ] Duplicate sample name found! Overwriting: PSC-49_R1_001 [2024-05-27 14:57:32,550] multiqc.modules.kallisto.kallisto [DEBUG ] Duplicate sample name found! Overwriting: PSC-54_R1_001 [2024-05-27 14:57:32,550] multiqc.modules.kallisto.kallisto [DEBUG ] Duplicate sample name found! Overwriting: PSC-73_R1_001 [2024-05-27 14:57:32,551] multiqc.modules.kallisto.kallisto [DEBUG ] Duplicate sample name found! Overwriting: PSC-57_R1_001 [2024-05-27 14:57:32,551] multiqc.modules.kallisto.kallisto [DEBUG ] Duplicate sample name found! Overwriting: PSC-39_R1_001 [2024-05-27 14:57:32,551] multiqc.modules.kallisto.kallisto [DEBUG ] Duplicate sample name found! Overwriting: PSC-58_R1_001 [2024-05-27 14:57:32,552] multiqc.modules.kallisto.kallisto [DEBUG ] Duplicate sample name found! Overwriting: PSC-69_R1_001 [2024-05-27 14:57:32,552] multiqc.modules.kallisto.kallisto [DEBUG ] Duplicate sample name found! Overwriting: PSC-75_R1_001 [2024-05-27 14:57:32,552] multiqc.modules.kallisto.kallisto [DEBUG ] Duplicate sample name found! Overwriting: PSC-35_R1_001 [2024-05-27 14:57:32,552] multiqc.modules.kallisto.kallisto [DEBUG ] Duplicate sample name found! Overwriting: PSC-19_R1_001 [2024-05-27 14:57:32,552] multiqc.modules.kallisto.kallisto [DEBUG ] Duplicate sample name found! Overwriting: PSC-38_R1_001 [2024-05-27 14:57:32,553] multiqc.modules.kallisto.kallisto [DEBUG ] Duplicate sample name found! Overwriting: PSC-63_R1_001 [2024-05-27 14:57:32,553] multiqc.modules.kallisto.kallisto [DEBUG ] Duplicate sample name found! Overwriting: PSC-67_R1_001 [2024-05-27 14:57:32,553] multiqc.modules.kallisto.kallisto [DEBUG ] Duplicate sample name found! Overwriting: PSC-36_R1_001 [2024-05-27 14:57:32,554] multiqc.modules.kallisto.kallisto [DEBUG ] Duplicate sample name found! Overwriting: PSC-24_R1_001 [2024-05-27 14:57:32,554] multiqc.modules.kallisto.kallisto [DEBUG ] Duplicate sample name found! Overwriting: PSC-43_R1_001 [2024-05-27 14:57:32,554] multiqc.modules.kallisto.kallisto [DEBUG ] Duplicate sample name found! Overwriting: PSC-56_R1_001 [2024-05-27 14:57:32,554] multiqc.modules.kallisto.kallisto [DEBUG ] Duplicate sample name found! Overwriting: PSC-61_R1_001 [2024-05-27 14:57:32,554] multiqc.modules.kallisto.kallisto [DEBUG ] Duplicate sample name found! Overwriting: PSC-78_R1_001 [2024-05-27 14:57:32,554] multiqc.modules.kallisto.kallisto [DEBUG ] Duplicate sample name found! Overwriting: PSC-81_R1_001 [2024-05-27 14:57:32,555] multiqc.modules.kallisto.kallisto [DEBUG ] Duplicate sample name found! Overwriting: PSC-23_R1_001 [2024-05-27 14:57:32,555] multiqc.modules.kallisto.kallisto [DEBUG ] Duplicate sample name found! Overwriting: PSC-34_R1_001 [2024-05-27 14:57:32,555] multiqc.modules.kallisto.kallisto [DEBUG ] Duplicate sample name found! Overwriting: PSC-37_R1_001 [2024-05-27 14:57:32,555] multiqc.modules.kallisto.kallisto [DEBUG ] Duplicate sample name found! Overwriting: PSC-83_R1_001 [2024-05-27 14:57:32,555] multiqc.modules.kallisto.kallisto [DEBUG ] Duplicate sample name found! Overwriting: PSC-76_R1_001 [2024-05-27 14:57:32,556] multiqc.modules.kallisto.kallisto [DEBUG ] Duplicate sample name found! Overwriting: PSC-59_R1_001 [2024-05-27 14:57:32,556] multiqc.modules.kallisto.kallisto [DEBUG ] Duplicate sample name found! Overwriting: PSC-48_R1_001 [2024-05-27 14:57:32,556] multiqc.modules.kallisto.kallisto [DEBUG ] Duplicate sample name found! Overwriting: PSC-40_R1_001 [2024-05-27 14:57:32,556] multiqc.modules.kallisto.kallisto [DEBUG ] Duplicate sample name found! Overwriting: PSC-52_R1_001 [2024-05-27 14:57:32,556] multiqc.modules.kallisto.kallisto [INFO ] Found 32 reports [2024-05-27 14:57:32,572] multiqc [INFO ] Compressing plot data [2024-05-27 14:57:32,575] multiqc [INFO ] Report : multiqc_report.html [2024-05-27 14:57:32,575] multiqc [INFO ] Data : multiqc_data [2024-05-27 14:57:32,575] multiqc [DEBUG ] Moving data file from '/tmp/tmpmzllx9ev/multiqc_data' to '/home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/code/multiqc_data' [2024-05-27 14:57:32,683] multiqc [INFO ] MultiQC complete