Index of /seashell/bu-github/paper-pycno-sswd-2021-2022/analyses/13-hisat-deseq2

[ICO]NameLast modifiedSizeDescription

[PARENTDIR]Parent Directory   -  
[   ]m_exon.tab 2024-06-02 07:14 4.7M 
[   ]m_spice_sites.tab 2024-06-02 07:14 4.0M 
[   ]GCA_032158295.index...>2024-06-02 07:14 115M 
[VID]GCA_032158295.index...>2024-06-02 07:14 20K 
[VID]GCA_032158295.index...>2024-06-02 07:14 5.8M 
[VID]GCA_032158295.index...>2024-06-02 07:14 1.2M 
[VID]GCA_032158295.index...>2024-06-02 07:21 289M 
[VID]GCA_032158295.index...>2024-06-02 07:21 116M 
[VID]GCA_032158295.index...>2024-06-02 07:22 118M 
[VID]GCA_032158295.index...>2024-06-02 07:22 321M 
[TXT]hisat2-build_stats.txt 2024-06-02 07:22 11K 
[TXT]PSC-19_hisat03.stdout 2024-06-02 07:22 0  
[TXT]PSC-19_hisat03.stderr 2024-06-02 07:30 634  
[   ]PSC-19_unmapped_read..>2024-06-02 07:30 1.9G 
[   ]PSC-19_unmapped_read..>2024-06-02 07:30 1.9G 
[TXT]PSC-23_hisat03.stdout 2024-06-02 07:30 0  
[TXT]PSC-23_hisat03.stderr 2024-06-02 07:38 634  
[   ]PSC-23_unmapped_read..>2024-06-02 07:38 2.1G 
[   ]PSC-23_unmapped_read..>2024-06-02 07:38 2.1G 
[TXT]PSC-24_hisat03.stdout 2024-06-02 07:38 0  
[TXT]PSC-24_hisat03.stderr 2024-06-02 07:46 635  
[   ]PSC-24_unmapped_read..>2024-06-02 07:46 2.4G 
[   ]PSC-24_unmapped_read..>2024-06-02 07:46 2.4G 
[TXT]PSC-34_hisat03.stdout 2024-06-02 07:46 0  
[TXT]PSC-34_hisat03.stderr 2024-06-02 07:56 631  
[   ]PSC-34_unmapped_read..>2024-06-02 07:56 8.8G 
[   ]PSC-34_unmapped_read..>2024-06-02 07:56 8.8G 
[TXT]PSC-35_hisat03.stdout 2024-06-02 07:56 0  
[TXT]PSC-35_hisat03.stderr 2024-06-02 08:05 634  
[   ]PSC-35_unmapped_read..>2024-06-02 08:05 7.7G 
[   ]PSC-35_unmapped_read..>2024-06-02 08:05 7.7G 
[TXT]PSC-36_hisat03.stdout 2024-06-02 08:05 0  
[TXT]PSC-36_hisat03.stderr 2024-06-02 08:13 634  
[   ]PSC-36_unmapped_read..>2024-06-02 08:13 5.6G 
[   ]PSC-36_unmapped_read..>2024-06-02 08:13 5.6G 
[TXT]PSC-37_hisat03.stdout 2024-06-02 08:13 0  
[TXT]PSC-37_hisat03.stderr 2024-06-02 08:19 631  
[   ]PSC-37_unmapped_read..>2024-06-02 08:19 5.3G 
[   ]PSC-37_unmapped_read..>2024-06-02 08:19 5.3G 
[TXT]PSC-38_hisat03.stdout 2024-06-02 08:19 0  
[TXT]PSC-38_hisat03.stderr 2024-06-02 08:29 632  
[   ]PSC-38_unmapped_read..>2024-06-02 08:29 8.8G 
[   ]PSC-38_unmapped_read..>2024-06-02 08:29 8.8G 
[TXT]PSC-39_hisat03.stdout 2024-06-02 08:29 0  
[TXT]PSC-39_hisat03.stderr 2024-06-02 08:37 633  
[   ]PSC-39_unmapped_read..>2024-06-02 08:37 6.8G 
[   ]PSC-39_unmapped_read..>2024-06-02 08:37 6.7G 
[TXT]PSC-40_hisat03.stdout 2024-06-02 08:37 0  
[TXT]PSC-40_hisat03.stderr 2024-06-02 08:44 632  
[   ]PSC-40_unmapped_read..>2024-06-02 08:44 6.4G 
[   ]PSC-40_unmapped_read..>2024-06-02 08:44 6.4G 
[TXT]PSC-42_hisat03.stdout 2024-06-02 08:44 0  
[TXT]PSC-42_hisat03.stderr 2024-06-02 08:52 634  
[   ]PSC-42_unmapped_read..>2024-06-02 08:52 1.8G 
[   ]PSC-42_unmapped_read..>2024-06-02 08:52 1.8G 
[TXT]PSC-43_hisat03.stdout 2024-06-02 08:52 0  
[TXT]PSC-43_hisat03.stderr 2024-06-02 08:59 634  
[   ]PSC-43_unmapped_read..>2024-06-02 08:59 1.8G 
[   ]PSC-43_unmapped_read..>2024-06-02 08:59 1.8G 
[TXT]PSC-48_hisat03.stdout 2024-06-02 09:00 0  
[TXT]PSC-48_hisat03.stderr 2024-06-02 09:06 634  
[   ]PSC-48_unmapped_read..>2024-06-02 09:06 1.8G 
[   ]PSC-48_unmapped_read..>2024-06-02 09:06 1.8G 
[TXT]PSC-49_hisat03.stdout 2024-06-02 09:06 0  
[TXT]PSC-49_hisat03.stderr 2024-06-02 09:14 634  
[   ]PSC-49_unmapped_read..>2024-06-02 09:14 2.1G 
[   ]PSC-49_unmapped_read..>2024-06-02 09:14 2.1G 
[TXT]PSC-52_hisat03.stdout 2024-06-02 09:14 0  
[TXT]PSC-52_hisat03.stderr 2024-06-02 09:21 634  
[   ]PSC-52_unmapped_read..>2024-06-02 09:21 2.0G 
[   ]PSC-52_unmapped_read..>2024-06-02 09:21 2.0G 
[TXT]PSC-54_hisat03.stdout 2024-06-02 09:21 0  
[TXT]PSC-54_hisat03.stderr 2024-06-02 09:30 634  
[   ]PSC-54_unmapped_read..>2024-06-02 09:30 2.2G 
[   ]PSC-54_unmapped_read..>2024-06-02 09:30 2.2G 
[TXT]PSC-56_hisat03.stdout 2024-06-02 09:30 0  
[TXT]PSC-56_hisat03.stderr 2024-06-02 09:37 635  
[   ]PSC-56_unmapped_read..>2024-06-02 09:37 2.2G 
[   ]PSC-56_unmapped_read..>2024-06-02 09:37 2.2G 
[TXT]PSC-57_hisat03.stdout 2024-06-02 09:37 0  
[TXT]PSC-57_hisat03.stderr 2024-06-02 09:45 633  
[   ]PSC-57_unmapped_read..>2024-06-02 09:45 1.7G 
[   ]PSC-57_unmapped_read..>2024-06-02 09:45 1.7G 
[TXT]PSC-58_hisat03.stdout 2024-06-02 09:45 0  
[TXT]PSC-58_hisat03.stderr 2024-06-02 09:53 634  
[   ]PSC-58_unmapped_read..>2024-06-02 09:53 2.0G 
[   ]PSC-58_unmapped_read..>2024-06-02 09:53 2.0G 
[TXT]PSC-59_hisat03.stdout 2024-06-02 09:53 0  
[TXT]PSC-59_hisat03.stderr 2024-06-02 10:00 634  
[   ]PSC-59_unmapped_read..>2024-06-02 10:00 2.1G 
[   ]PSC-59_unmapped_read..>2024-06-02 10:01 2.1G 
[TXT]PSC-61_hisat03.stdout 2024-06-02 10:01 0  
[TXT]PSC-61_hisat03.stderr 2024-06-02 10:08 634  
[   ]PSC-61_unmapped_read..>2024-06-02 10:08 1.9G 
[   ]PSC-61_unmapped_read..>2024-06-02 10:08 1.9G 
[TXT]PSC-63_hisat03.stdout 2024-06-02 10:08 0  
[TXT]PSC-63_hisat03.stderr 2024-06-02 10:15 634  
[   ]PSC-63_unmapped_read..>2024-06-02 10:15 1.9G 
[   ]PSC-63_unmapped_read..>2024-06-02 10:15 1.9G 
[TXT]PSC-64_hisat03.stdout 2024-06-02 10:15 0  
[TXT]PSC-64_hisat03.stderr 2024-06-02 10:23 634  
[   ]PSC-64_unmapped_read..>2024-06-02 10:23 2.1G 
[   ]PSC-64_unmapped_read..>2024-06-02 10:23 2.1G 
[TXT]PSC-67_hisat03.stdout 2024-06-02 10:23 0  
[TXT]PSC-67_hisat03.stderr 2024-06-02 10:32 635  
[   ]PSC-67_unmapped_read..>2024-06-02 10:32 2.4G 
[   ]PSC-67_unmapped_read..>2024-06-02 10:32 2.4G 
[TXT]PSC-69_hisat03.stdout 2024-06-02 10:32 0  
[TXT]PSC-69_hisat03.stderr 2024-06-02 10:40 635  
[   ]PSC-69_unmapped_read..>2024-06-02 10:40 2.2G 
[   ]PSC-69_unmapped_read..>2024-06-02 10:40 2.2G 
[TXT]PSC-71_hisat03.stdout 2024-06-02 10:40 0  
[TXT]PSC-71_hisat03.stderr 2024-06-02 10:49 635  
[   ]PSC-71_unmapped_read..>2024-06-02 10:49 2.5G 
[   ]PSC-71_unmapped_read..>2024-06-02 10:49 2.5G 
[TXT]PSC-73_hisat03.stdout 2024-06-02 10:49 0  
[TXT]PSC-73_hisat03.stderr 2024-06-02 10:57 635  
[   ]PSC-73_unmapped_read..>2024-06-02 10:57 2.3G 
[   ]PSC-73_unmapped_read..>2024-06-02 10:57 2.3G 
[TXT]PSC-75_hisat03.stdout 2024-06-02 10:57 0  
[TXT]PSC-75_hisat03.stderr 2024-06-02 11:06 636  
[   ]PSC-75_unmapped_read..>2024-06-02 11:06 4.7G 
[   ]PSC-75_unmapped_read..>2024-06-02 11:06 4.7G 
[TXT]PSC-76_hisat03.stdout 2024-06-02 11:06 0  
[TXT]PSC-76_hisat03.stderr 2024-06-02 11:14 634  
[   ]PSC-76_unmapped_read..>2024-06-02 11:14 2.1G 
[   ]PSC-76_unmapped_read..>2024-06-02 11:14 2.1G 
[TXT]PSC-78_hisat03.stdout 2024-06-02 11:14 0  
[TXT]PSC-78_hisat03.stderr 2024-06-02 11:21 634  
[   ]PSC-78_unmapped_read..>2024-06-02 11:21 3.0G 
[   ]PSC-78_unmapped_read..>2024-06-02 11:21 3.0G 
[TXT]PSC-81_hisat03.stdout 2024-06-02 11:21 0  
[TXT]PSC-81_hisat03.stderr 2024-06-02 11:30 635  
[   ]PSC-81_unmapped_read..>2024-06-02 11:30 2.5G 
[   ]PSC-81_unmapped_read..>2024-06-02 11:30 2.5G 
[TXT]PSC-83_hisat03.stdout 2024-06-02 11:30 0  
[TXT]PSC-83_hisat03.stderr 2024-06-02 11:39 634  
[   ]PSC-83_unmapped_read..>2024-06-02 11:39 2.1G 
[   ]PSC-83_unmapped_read..>2024-06-02 11:39 2.1G 
[   ]PSC-19_03.bam 2024-06-02 11:44 4.1G 
[   ]PSC-19_03.sorted.bam 2024-06-02 11:47 2.2G 
[   ]PSC-19_03.sorted.bam..>2024-06-02 11:47 822K 
[   ]PSC-23_03.bam 2024-06-02 11:51 4.1G 
[   ]PSC-23_03.sorted.bam 2024-06-02 11:54 2.3G 
[   ]PSC-23_03.sorted.bam..>2024-06-02 11:54 851K 
[   ]PSC-24_03.bam 2024-06-02 11:59 3.9G 
[   ]PSC-24_03.sorted.bam 2024-06-02 12:02 2.2G 
[   ]PSC-24_03.sorted.bam..>2024-06-02 12:02 787K 
[   ]PSC-34_03.bam 2024-06-02 12:06 2.9G 
[   ]PSC-34_03.sorted.bam 2024-06-02 12:09 2.5G 
[   ]PSC-34_03.sorted.bam..>2024-06-02 12:09 440K 
[   ]PSC-35_03.bam 2024-06-02 12:14 2.9G 
[   ]PSC-35_03.sorted.bam 2024-06-02 12:17 2.4G 
[   ]PSC-35_03.sorted.bam..>2024-06-02 12:17 480K 
[   ]PSC-36_03.bam 2024-06-02 12:21 2.5G 
[   ]PSC-36_03.sorted.bam 2024-06-02 12:22 1.9G 
[   ]PSC-36_03.sorted.bam..>2024-06-02 12:22 507K 
[   ]PSC-37_03.bam 2024-06-02 12:25 1.8G 
[   ]PSC-37_03.sorted.bam 2024-06-02 12:26 1.6G 
[   ]PSC-37_03.sorted.bam..>2024-06-02 12:26 422K 
[   ]PSC-38_03.bam 2024-06-02 12:32 3.1G 
[   ]PSC-38_03.sorted.bam 2024-06-02 12:35 2.7G 
[   ]PSC-38_03.sorted.bam..>2024-06-02 12:35 472K 
[   ]PSC-39_03.bam 2024-06-02 12:38 2.2G 
[   ]PSC-39_03.sorted.bam 2024-06-02 12:41 1.9G 
[   ]PSC-39_03.sorted.bam..>2024-06-02 12:41 502K 
[   ]PSC-40_03.bam 2024-06-02 12:45 2.3G 
[   ]PSC-40_03.sorted.bam 2024-06-02 12:47 1.9G 
[   ]PSC-40_03.sorted.bam..>2024-06-02 12:47 469K 
[   ]PSC-42_03.bam 2024-06-02 12:52 3.7G 
[   ]PSC-42_03.sorted.bam 2024-06-02 12:54 2.1G 
[   ]PSC-42_03.sorted.bam..>2024-06-02 12:54 847K 
[   ]PSC-43_03.bam 2024-06-02 12:59 3.9G 
[   ]PSC-43_03.sorted.bam 2024-06-02 13:02 2.1G 
[   ]PSC-43_03.sorted.bam..>2024-06-02 13:02 797K 
[   ]PSC-48_03.bam 2024-06-02 13:07 3.3G 
[   ]PSC-48_03.sorted.bam 2024-06-02 13:10 1.9G 
[   ]PSC-48_03.sorted.bam..>2024-06-02 13:10 743K 
[   ]PSC-49_03.bam 2024-06-02 13:14 3.8G 
[   ]PSC-49_03.sorted.bam 2024-06-02 13:16 2.1G 
[   ]PSC-49_03.sorted.bam..>2024-06-02 13:16 796K 
[   ]PSC-52_03.bam 2024-06-02 13:22 3.9G 
[   ]PSC-52_03.sorted.bam 2024-06-02 13:24 2.2G 
[   ]PSC-52_03.sorted.bam..>2024-06-02 13:24 830K 
[   ]PSC-54_03.bam 2024-06-02 13:30 4.3G 
[   ]PSC-54_03.sorted.bam 2024-06-02 13:33 2.4G 
[   ]PSC-54_03.sorted.bam..>2024-06-02 13:33 882K 
[   ]PSC-56_03.bam 2024-06-02 13:37 3.6G 
[   ]PSC-56_03.sorted.bam 2024-06-02 13:39 2.0G 
[   ]PSC-56_03.sorted.bam..>2024-06-02 13:39 772K 
[   ]PSC-57_03.bam 2024-06-02 13:46 4.0G 
[   ]PSC-57_03.sorted.bam 2024-06-02 13:49 2.1G 
[   ]PSC-57_03.sorted.bam..>2024-06-02 13:49 769K 
[   ]PSC-58_03.bam 2024-06-02 13:53 3.9G 
[   ]PSC-58_03.sorted.bam 2024-06-02 13:56 2.2G 
[   ]PSC-58_03.sorted.bam..>2024-06-02 13:56 881K 
[   ]PSC-59_03.bam 2024-06-02 14:02 3.9G 
[   ]PSC-59_03.sorted.bam 2024-06-02 14:05 2.2G 
[   ]PSC-59_03.sorted.bam..>2024-06-02 14:05 774K 
[   ]PSC-61_03.bam 2024-06-02 14:09 3.5G 
[   ]PSC-61_03.sorted.bam 2024-06-02 14:12 1.9G 
[   ]PSC-61_03.sorted.bam..>2024-06-02 14:12 774K 
[   ]PSC-63_03.bam 2024-06-02 14:16 3.8G 
[   ]PSC-63_03.sorted.bam 2024-06-02 14:18 2.1G 
[   ]PSC-63_03.sorted.bam..>2024-06-02 14:18 810K 
[   ]PSC-64_03.bam 2024-06-02 14:26 4.2G 
[   ]PSC-64_03.sorted.bam 2024-06-02 14:29 2.3G 
[   ]PSC-64_03.sorted.bam..>2024-06-02 14:29 942K 
[   ]PSC-67_03.bam 2024-06-02 14:34 4.2G 
[   ]PSC-67_03.sorted.bam 2024-06-02 14:36 2.4G 
[   ]PSC-67_03.sorted.bam..>2024-06-02 14:36 873K 
[   ]PSC-69_03.bam 2024-06-02 14:42 4.0G 
[   ]PSC-69_03.sorted.bam 2024-06-02 14:45 2.2G 
[   ]PSC-69_03.sorted.bam..>2024-06-02 14:45 787K 
[   ]PSC-71_03.bam 2024-06-02 14:51 4.7G 
[   ]PSC-71_03.sorted.bam 2024-06-02 14:54 2.6G 
[   ]PSC-71_03.sorted.bam..>2024-06-02 14:54 862K 
[   ]PSC-73_03.bam 2024-06-02 14:59 4.4G 
[   ]PSC-73_03.sorted.bam 2024-06-02 15:02 2.5G 
[   ]PSC-73_03.sorted.bam..>2024-06-02 15:02 885K 
[   ]PSC-75_03.bam 2024-06-02 15:07 3.8G 
[   ]PSC-75_03.sorted.bam 2024-06-02 15:09 2.7G 
[   ]PSC-75_03.sorted.bam..>2024-06-02 15:10 630K 
[   ]PSC-76_03.bam 2024-06-02 15:14 3.9G 
[   ]PSC-76_03.sorted.bam 2024-06-02 15:16 2.2G 
[   ]PSC-76_03.sorted.bam..>2024-06-02 15:17 810K 
[   ]PSC-78_03.bam 2024-06-02 15:21 3.5G 
[   ]PSC-78_03.sorted.bam 2024-06-02 15:23 2.1G 
[   ]PSC-78_03.sorted.bam..>2024-06-02 15:23 721K 
[   ]PSC-81_03.bam 2024-06-02 15:28 4.5G 
[   ]PSC-81_03.sorted.bam 2024-06-02 15:31 2.6G 
[   ]PSC-81_03.sorted.bam..>2024-06-02 15:31 926K 
[   ]PSC-83_03.bam 2024-06-02 15:37 4.4G 
[   ]PSC-83_03.sorted.bam 2024-06-02 15:39 2.4G 
[   ]PSC-83_03.sorted.bam..>2024-06-02 15:39 872K 
[   ]mod_augustus.gff 2024-06-02 15:40 37M 
[   ]PSC-19_03.gtf 2024-06-02 15:41 28M 
[   ]PSC-23_03.gtf 2024-06-02 15:43 28M 
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[   ]PSC-34_03.gtf 2024-06-02 15:44 27M 
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[   ]t_data.ctab 2024-06-02 16:19 1.9M 
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[TXT]multiqc_report.html 2024-06-03 09:12 1.0M 
[DIR]multiqc_data/ 2024-06-03 09:12 -