[quant] fragment length distribution will be estimated from the data
[index] k-mer length: 31
[index] number of targets: 29,476
[index] number of k-mers: 39,350,352
[index] number of equivalence classes: 62,859
[quant] running in paired-end mode
[quant] will process pair 1: /home/shared/8TB_HDD_02/graceac9/data/pycno2021/PSC-39_R1_001.fastq.gz.fastp-trim.20220810.fq.gz
                             /home/shared/8TB_HDD_02/graceac9/data/pycno2021/PSC-39_R2_001.fastq.gz.fastp-trim.20220810.fq.gz
[quant] finding pseudoalignments for the reads ... done
[quant] processed 22,631,446 reads, 4,742,595 reads pseudoaligned
[quant] estimated average fragment length: 284.353
[   em] quantifying the abundances ... done
[   em] the Expectation-Maximization algorithm ran for 99 rounds