[quant] fragment length distribution will be estimated from the data [index] k-mer length: 31 [index] number of targets: 26,581 [index] number of k-mers: 29,049,947 [index] number of equivalence classes: 47,343 [quant] running in paired-end mode [quant] will process pair 1: /home/shared/8TB_HDD_02/graceac9/data/pycno2021/PSC-75_R1_001.fastq.gz.fastp-trim.20220810.fq.gz /home/shared/8TB_HDD_02/graceac9/data/pycno2021/PSC-75_R2_001.fastq.gz.fastp-trim.20220810.fq.gz [quant] finding pseudoalignments for the reads ... done [quant] processed 24,371,724 reads, 2,423,991 reads pseudoaligned [quant] estimated average fragment length: 299.114 [ em] quantifying the abundances ... done [ em] the Expectation-Maximization algorithm ran for 852 rounds