Module Section Sample Name Source Bowtie 2 / HiSAT2 all_sections PSC-35_hisat /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-35_hisat.stderr Bowtie 2 / HiSAT2 all_sections PSC-73_hisat /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-73_hisat.stderr Bowtie 2 / HiSAT2 all_sections PSC-75_hisat /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-75_hisat.stderr Bowtie 2 / HiSAT2 all_sections PSC-71_hisat /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-71_hisat.stderr Bowtie 2 / HiSAT2 all_sections PSC-40_hisat /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-40_hisat.stderr Bowtie 2 / HiSAT2 all_sections PSC-59_hisat /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-59_hisat.stderr Bowtie 2 / HiSAT2 all_sections PSC-37_hisat /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-37_hisat.stderr Bowtie 2 / HiSAT2 all_sections PSC-38_hisat /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-38_hisat.stderr Bowtie 2 / HiSAT2 all_sections PSC-36_hisat /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-36_hisat.stderr Bowtie 2 / HiSAT2 all_sections PSC-24_hisat /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-24_hisat.stderr Bowtie 2 / HiSAT2 all_sections PSC-43_hisat /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-43_hisat.stderr Bowtie 2 / HiSAT2 all_sections PSC-49_hisat /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-49_hisat.stderr Bowtie 2 / HiSAT2 all_sections PSC-48_hisat /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-48_hisat.stderr Bowtie 2 / HiSAT2 all_sections PSC-64_hisat /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-64_hisat.stderr Bowtie 2 / HiSAT2 all_sections PSC-78_hisat /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-78_hisat.stderr Bowtie 2 / HiSAT2 all_sections PSC-57_hisat /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-57_hisat.stderr Bowtie 2 / HiSAT2 all_sections PSC-52_hisat /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-52_hisat.stderr Bowtie 2 / HiSAT2 all_sections hisat /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/hisat.out Bowtie 2 / HiSAT2 all_sections PSC-81_hisat /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-81_hisat.stderr Bowtie 2 / HiSAT2 all_sections PSC-58_hisat /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-58_hisat.stderr Bowtie 2 / HiSAT2 all_sections PSC-69_hisat /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-69_hisat.stderr Bowtie 2 / HiSAT2 all_sections PSC-63_hisat /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-63_hisat.stderr Bowtie 2 / HiSAT2 all_sections PSC-34_hisat /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-34_hisat.stderr Bowtie 2 / HiSAT2 all_sections PSC-83_hisat /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-83_hisat.stderr Bowtie 2 / HiSAT2 all_sections PSC-42_hisat /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-42_hisat.stderr Bowtie 2 / HiSAT2 all_sections PSC-23_hisat /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-23_hisat.stderr Bowtie 2 / HiSAT2 all_sections PSC-54_hisat /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-54_hisat.stderr Bowtie 2 / HiSAT2 all_sections PSC-19_hisat /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-19_hisat.stderr Bowtie 2 / HiSAT2 all_sections PSC-56_hisat /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-56_hisat.stderr Bowtie 2 / HiSAT2 all_sections PSC-76_hisat /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-76_hisat.stderr Bowtie 2 / HiSAT2 all_sections PSC-61_hisat /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-61_hisat.stderr Bowtie 2 / HiSAT2 all_sections PSC-39_hisat /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-39_hisat.stderr Bowtie 2 / HiSAT2 all_sections PSC-67_hisat /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-67_hisat.stderr FastQC all_sections PSC-61_R1_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-61_R1_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-75_R1_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-75_R1_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-19_R2_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-19_R2_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-19_R1_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-19_R1_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-59_R1_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-59_R1_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-54_R1_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-54_R1_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-35_R2_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-35_R2_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-73_R1_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-73_R1_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-73_R2_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-73_R2_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-48_R2_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-48_R2_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-64_R1_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-64_R1_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-69_R1_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-69_R1_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-71_R2_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-71_R2_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-23_R2_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-23_R2_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-40_R1_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-40_R1_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-37_R2_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-37_R2_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-39_R2_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-39_R2_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-23_R1_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-23_R1_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-83_R1_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-83_R1_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-34_R1_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-34_R1_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-24_R2_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-24_R2_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-63_R2_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-63_R2_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-48_R1_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-48_R1_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-34_R2_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-34_R2_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-54_R2_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-54_R2_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-81_R1_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-81_R1_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-78_R1_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-78_R1_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-24_R1_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-24_R1_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-57_R1_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-57_R1_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-76_R1_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-76_R1_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-78_R2_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-78_R2_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-56_R2_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-56_R2_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-37_R1_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-37_R1_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-35_R1_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-35_R1_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-67_R2_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-67_R2_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-52_R1_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-52_R1_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-58_R2_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-58_R2_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-61_R2_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-61_R2_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-63_R1_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-63_R1_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-42_R1_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-42_R1_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-42_R2_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-42_R2_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-38_R2_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-38_R2_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-81_R2_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-81_R2_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-59_R2_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-59_R2_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-56_R1_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-56_R1_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-52_R2_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-52_R2_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-49_R1_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-49_R1_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-58_R1_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-58_R1_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-69_R2_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-69_R2_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-38_R1_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-38_R1_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-57_R2_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-57_R2_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-76_R2_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-76_R2_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-67_R1_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-67_R1_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-36_R1_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-36_R1_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-43_R2_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-43_R2_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-64_R2_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-64_R2_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-83_R2_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-83_R2_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-39_R1_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-39_R1_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-49_R2_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-49_R2_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-71_R1_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-71_R1_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-40_R2_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-40_R2_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-43_R1_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-43_R1_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-75_R2_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-75_R2_001.fastq.gz.fastp-trim.20220810_fastqc.zip FastQC all_sections PSC-36_R2_001 /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2/PSC-36_R2_001.fastq.gz.fastp-trim.20220810_fastqc.zip