[2024-05-26 11:02:07,427] multiqc [DEBUG ] This is MultiQC v1.12 [2024-05-26 11:02:07,427] multiqc [DEBUG ] No MultiQC config found: /opt/anaconda/anaconda3/lib/python3.9/site-packages/multiqc_config.yaml [2024-05-26 11:02:07,427] multiqc [DEBUG ] No MultiQC config found: /home/sr320/.multiqc_config.yaml [2024-05-26 11:02:07,428] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-05-26 11:02:07,428] multiqc [DEBUG ] Command used: /opt/anaconda/anaconda3/bin/multiqc ../analyses/10-hisat-deseq2/ -o ../analyses/10-hisat-deseq2/ [2024-05-26 11:02:08,333] multiqc [WARNING] MultiQC Version v1.22.1 now available! [2024-05-26 11:02:08,333] multiqc [DEBUG ] Command : /opt/anaconda/anaconda3/bin/multiqc ../analyses/10-hisat-deseq2/ -o ../analyses/10-hisat-deseq2/ [2024-05-26 11:02:08,334] multiqc [DEBUG ] Working dir : /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/code [2024-05-26 11:02:08,334] multiqc [DEBUG ] Template : default [2024-05-26 11:02:08,334] multiqc [DEBUG ] Running Python 3.9.7 (default, Sep 16 2021, 13:09:58) [GCC 7.5.0] [2024-05-26 11:02:08,335] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, pbmarkdup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, checkqc, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype, whatshap [2024-05-26 11:02:08,335] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmp18wjnvv0 [2024-05-26 11:02:08,757] multiqc [INFO ] Search path : /home/shared/8TB_HDD_03/sr320/github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2 [2024-05-26 11:02:08,770] multiqc [DEBUG ] Ignoring directory as matched fn_ignore_dirs: 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[2024-05-26 11:02:08,853] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PSC-24_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:08,853] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-24_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:08,877] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-24_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:08,879] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GCA_032158295.index.3.ht2 [2024-05-26 11:02:08,880] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GCA_032158295.index.3.ht2 [2024-05-26 11:02:08,880] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GCA_032158295.index.3.ht2 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[2024-05-26 11:02:09,032] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PSC-59_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:09,032] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PSC-59_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:09,032] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PSC-59_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:09,032] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PSC-59_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:09,032] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-59_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:09,053] multiqc [DEBUG ] File ignored by nanostat because 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[DEBUG ] Ignoring file as matched an ignore pattern: PSC-54_02.sam [2024-05-26 11:02:10,673] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-37.sorted.bam.bai [2024-05-26 11:02:10,675] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-42_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,676] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-42_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,676] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-42_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,677] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-42_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,677] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern 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[2024-05-26 11:02:10,698] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-42_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,702] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-19_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,702] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-19_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,702] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-19_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,703] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-19_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,703] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern 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[2024-05-26 11:02:10,724] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-19_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,725] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-49.sorted.bam [2024-05-26 11:02:10,728] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-38.sorted.bam.bai [2024-05-26 11:02:10,729] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-39.sam [2024-05-26 11:02:10,729] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-36.sam [2024-05-26 11:02:10,729] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-73.bam [2024-05-26 11:02:10,729] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-69.sam [2024-05-26 11:02:10,731] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-48_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,731] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-48_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,732] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-48_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,732] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-48_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,732] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PSC-48_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,732] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PSC-48_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,732] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 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pattern filesize limit: PSC-63_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,760] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-63_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,760] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-63_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,761] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-63_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,761] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PSC-63_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,761] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PSC-63_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,761] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PSC-63_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,761] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PSC-63_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,761] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PSC-63_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,761] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-63_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,781] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-63_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,783] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-75.bam [2024-05-26 11:02:10,786] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-56_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,786] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-56_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,786] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-56_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,787] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-56_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,787] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PSC-56_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,787] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PSC-56_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,787] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PSC-56_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,787] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PSC-56_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,787] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PSC-56_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,787] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-56_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,808] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-56_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,821] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-61_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,821] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-61_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,821] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-61_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,822] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-61_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,822] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PSC-61_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,822] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern 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[2024-05-26 11:02:10,846] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-56_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,847] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-56_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,847] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-56_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,848] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-56_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,848] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PSC-56_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,848] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern 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[2024-05-26 11:02:10,870] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-81.sorted.bam.bai [2024-05-26 11:02:10,870] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-83.sorted.bam [2024-05-26 11:02:10,870] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-57.bam [2024-05-26 11:02:10,872] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-76_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,873] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-76_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,873] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-76_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,874] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: 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11:02:10,874] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-76_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,894] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-76_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,900] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-40_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,901] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-40_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,901] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-40_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,902] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: 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11:02:10,902] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-40_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,924] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-40_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,925] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-24_02.sam [2024-05-26 11:02:10,929] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-34_02.sam [2024-05-26 11:02:10,934] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-63_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,934] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-63_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,934] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-63_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,935] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-63_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,935] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PSC-63_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,935] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PSC-63_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,935] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PSC-63_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,935] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PSC-63_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,935] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PSC-63_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,935] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-63_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,956] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-63_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,961] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-40.sam [2024-05-26 11:02:10,961] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-59.bam [2024-05-26 11:02:10,961] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-56.bam [2024-05-26 11:02:10,965] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-63_02.sam [2024-05-26 11:02:10,965] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-38_02.sam [2024-05-26 11:02:10,965] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-43.bam [2024-05-26 11:02:10,965] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-57.sam [2024-05-26 11:02:10,967] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-42_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,967] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-42_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,967] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-42_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,968] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-42_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,968] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PSC-42_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,968] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PSC-42_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,968] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PSC-42_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,968] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PSC-42_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,968] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PSC-42_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,968] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-42_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,989] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-42_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,993] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-64_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,993] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-64_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,993] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-64_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,994] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-64_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:10,994] multiqc [DEBUG ] File ignored by 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PSC-69_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,023] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-69_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,023] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PSC-69_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,023] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PSC-69_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,023] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PSC-69_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,023] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PSC-69_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,023] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PSC-69_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,023] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-69_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,044] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-69_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,048] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-48.sorted.bam [2024-05-26 11:02:11,050] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: hisat2-build_stats.txt [2024-05-26 11:02:11,050] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: hisat2-build_stats.txt [2024-05-26 11:02:11,051] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: hisat2-build_stats.txt [2024-05-26 11:02:11,053] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-69.bam [2024-05-26 11:02:11,053] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-19.sam [2024-05-26 11:02:11,057] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-81_02.sam [2024-05-26 11:02:11,057] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-58.sorted.bam.bai [2024-05-26 11:02:11,057] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-57.sorted.bam.bai [2024-05-26 11:02:11,060] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-78.sorted.bam.bai [2024-05-26 11:02:11,060] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-23.sorted.bam [2024-05-26 11:02:11,060] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-43.sorted.bam.bai [2024-05-26 11:02:11,060] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-67.bam [2024-05-26 11:02:11,060] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-64.sam [2024-05-26 11:02:11,066] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-71_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,066] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-71_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,067] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-71_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,067] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-71_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,067] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PSC-71_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,067] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PSC-71_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,067] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PSC-71_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,067] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PSC-71_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,067] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PSC-71_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,068] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-71_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,088] multiqc [DEBUG ] File ignored by nanostat because it exceeded 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[2024-05-26 11:02:11,097] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PSC-54_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,097] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PSC-54_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,097] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PSC-54_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,097] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PSC-54_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,097] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PSC-54_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,097] multiqc [DEBUG ] File ignored by 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11:02:11,123] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-59_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,143] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-59_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,150] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-43_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,151] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-43_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,151] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-43_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,151] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-43_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,152] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PSC-43_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,152] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PSC-43_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,152] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PSC-43_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,152] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PSC-43_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,152] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PSC-43_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,152] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-43_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,173] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-43_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,174] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-81.bam [2024-05-26 11:02:11,176] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-58_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,177] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-58_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,177] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-58_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,177] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-58_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,178] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PSC-58_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,178] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PSC-58_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,178] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PSC-58_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,178] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PSC-58_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,178] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PSC-58_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,178] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-58_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,199] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-58_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:11,200] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-75_02.sam [2024-05-26 11:02:11,204] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-19.sorted.bam.bai [2024-05-26 11:02:11,208] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-71.bam [2024-05-26 11:02:11,212] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-54.sam [2024-05-26 11:02:11,212] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-40.sorted.bam [2024-05-26 11:02:11,213] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: m_exon.tab [2024-05-26 11:02:11,214] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: m_exon.tab [2024-05-26 11:02:11,214] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: m_exon.tab [2024-05-26 11:02:11,214] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: m_exon.tab [2024-05-26 11:02:11,215] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: m_exon.tab [2024-05-26 11:02:11,215] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: m_exon.tab [2024-05-26 11:02:11,215] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: m_exon.tab [2024-05-26 11:02:11,215] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: m_exon.tab [2024-05-26 11:02:11,215] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: m_exon.tab [2024-05-26 11:02:11,215] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: m_exon.tab [2024-05-26 11:02:11,215] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: m_exon.tab [2024-05-26 11:02:11,215] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: m_exon.tab [2024-05-26 11:02:11,215] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: m_exon.tab [2024-05-26 11:02:12,967] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: m_exon.tab [2024-05-26 11:02:13,070] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-67.sorted.bam.bai [2024-05-26 11:02:13,072] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-34_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,073] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-34_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,073] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-34_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,074] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-34_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,074] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PSC-34_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,074] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PSC-34_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,074] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PSC-34_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,074] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PSC-34_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,074] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PSC-34_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,074] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-34_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,095] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-34_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,097] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-59.sorted.bam [2024-05-26 11:02:13,102] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-81_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,102] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-81_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,102] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-81_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,103] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-81_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,103] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PSC-81_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,103] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PSC-81_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,103] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PSC-81_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,103] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PSC-81_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,103] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PSC-81_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,103] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-81_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,124] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-81_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,127] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-35_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,128] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-35_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,128] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-35_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,128] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-35_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,129] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PSC-35_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,129] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PSC-35_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,129] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PSC-35_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,129] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PSC-35_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,129] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PSC-35_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,129] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-35_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,151] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-35_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,152] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-76.sam [2024-05-26 11:02:13,156] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-35_02.sam [2024-05-26 11:02:13,157] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-57.sorted.bam [2024-05-26 11:02:13,167] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-39.bam [2024-05-26 11:02:13,172] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-23_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,173] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-23_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,173] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-23_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,174] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-23_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,174] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PSC-23_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,174] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PSC-23_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,174] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PSC-23_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,174] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PSC-23_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,174] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PSC-23_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,174] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-23_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,195] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-23_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,197] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-42.sorted.bam.bai [2024-05-26 11:02:13,197] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-57_02.sam [2024-05-26 11:02:13,197] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-75.sorted.bam.bai [2024-05-26 11:02:13,197] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-58_02.sam [2024-05-26 11:02:13,197] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-34.sam [2024-05-26 11:02:13,197] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-83.sam [2024-05-26 11:02:13,198] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-59_02.sam [2024-05-26 11:02:13,201] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-75.sorted.bam [2024-05-26 11:02:13,201] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-63.sorted.bam [2024-05-26 11:02:13,201] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-49.sam [2024-05-26 11:02:13,203] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-61_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,203] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-61_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,203] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-61_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,204] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-61_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,204] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PSC-61_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,204] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PSC-61_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,204] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PSC-61_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,204] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PSC-61_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,204] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PSC-61_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,204] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-61_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,225] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-61_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,231] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-83_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,232] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-83_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,232] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-83_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,233] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-83_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,233] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PSC-83_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,233] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PSC-83_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,233] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PSC-83_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,233] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PSC-83_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,233] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PSC-83_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,233] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-83_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,254] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-83_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,255] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-40.bam [2024-05-26 11:02:13,258] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-58.bam [2024-05-26 11:02:13,258] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-56.sorted.bam [2024-05-26 11:02:13,260] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-39_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,260] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-39_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,261] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-39_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,261] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-39_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,261] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PSC-39_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,261] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PSC-39_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,261] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PSC-39_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,261] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PSC-39_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,261] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PSC-39_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,261] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-39_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,284] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-39_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,285] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-48.bam [2024-05-26 11:02:13,286] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-78.sorted.bam [2024-05-26 11:02:13,288] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-43_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,288] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-43_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,288] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-43_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,289] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-43_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,289] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PSC-43_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,289] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PSC-43_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,289] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PSC-43_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,289] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PSC-43_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,289] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PSC-43_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,289] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-43_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,310] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-43_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,313] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-73_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,313] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-73_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,313] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-73_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,314] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-73_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,314] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PSC-73_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,314] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PSC-73_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,314] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PSC-73_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,314] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PSC-73_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,314] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PSC-73_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,314] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-73_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,335] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-73_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,336] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-37.sorted.bam [2024-05-26 11:02:13,341] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-48_02.sam [2024-05-26 11:02:13,346] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-67_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,346] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-67_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,347] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-67_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,347] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-67_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,347] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PSC-67_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,347] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PSC-67_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,347] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PSC-67_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,347] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PSC-67_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,347] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PSC-67_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,347] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-67_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,368] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-67_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,371] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-49_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,371] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-49_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,372] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-49_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,372] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-49_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,372] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PSC-49_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,372] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PSC-49_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,372] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PSC-49_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,372] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PSC-49_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,372] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PSC-49_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,372] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-49_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,393] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-49_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,396] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: hisat.out [2024-05-26 11:02:13,396] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: hisat.out [2024-05-26 11:02:13,396] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: hisat.out [2024-05-26 11:02:13,397] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: hisat.out [2024-05-26 11:02:13,404] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: hisat.out [2024-05-26 11:02:13,405] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-35.sorted.bam.bai [2024-05-26 11:02:13,405] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-69.sorted.bam [2024-05-26 11:02:13,409] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-76.sorted.bam [2024-05-26 11:02:13,409] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-67.sam [2024-05-26 11:02:13,411] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-83_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,411] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-83_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,411] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-83_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,412] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-83_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,412] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PSC-83_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,412] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PSC-83_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,412] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PSC-83_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,412] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PSC-83_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,412] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PSC-83_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,412] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-83_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,432] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-83_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,437] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-71.sorted.bam.bai [2024-05-26 11:02:13,440] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-57_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,440] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-57_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,440] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-57_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,441] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-57_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,441] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PSC-57_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,441] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PSC-57_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,441] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PSC-57_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,441] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PSC-57_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,441] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PSC-57_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,441] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-57_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,462] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-57_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,464] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-52.bam [2024-05-26 11:02:13,466] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-78_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,466] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-78_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,466] multiqc [DEBUG ] File ignored by lima/summary because it exceeded 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[2024-05-26 11:02:13,467] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PSC-78_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,467] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-78_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,488] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-78_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,491] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-69_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,491] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-69_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,491] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-69_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,492] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-69_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,492] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PSC-69_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,492] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PSC-69_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,492] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PSC-69_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,492] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PSC-69_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,492] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PSC-69_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,492] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-69_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,513] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-69_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,515] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-83_02.sam [2024-05-26 11:02:13,518] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-35.sam [2024-05-26 11:02:13,518] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-39.sorted.bam.bai [2024-05-26 11:02:13,518] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-76_02.sam [2024-05-26 11:02:13,519] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-76.sorted.bam.bai [2024-05-26 11:02:13,524] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-54_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,524] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-54_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,524] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-54_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,525] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-54_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,525] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PSC-54_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,525] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PSC-54_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,525] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PSC-54_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,525] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PSC-54_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,525] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PSC-54_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,525] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-54_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,546] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-54_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,547] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-43.sorted.bam [2024-05-26 11:02:13,550] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-76_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,550] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-76_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,550] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-76_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,551] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-76_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,551] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PSC-76_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,551] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PSC-76_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,551] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PSC-76_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,551] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PSC-76_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,551] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PSC-76_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,551] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-76_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,572] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-76_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,575] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-48_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,575] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-48_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,576] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-48_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,576] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-48_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,576] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 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11:02:13,598] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-48_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,599] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-58.sorted.bam [2024-05-26 11:02:13,599] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-42.sorted.bam [2024-05-26 11:02:13,603] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-83.sorted.bam.bai [2024-05-26 11:02:13,615] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-67_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,615] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-67_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,615] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: 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[DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PSC-67_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,616] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-67_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,637] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-67_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,638] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-42_02.sam [2024-05-26 11:02:13,641] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-39_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,641] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-39_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,641] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-39_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,642] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-39_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,642] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PSC-39_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,642] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PSC-39_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,642] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PSC-39_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,642] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PSC-39_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,642] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PSC-39_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,642] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-39_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,664] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-39_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,669] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-36.sorted.bam [2024-05-26 11:02:13,674] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-36_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,674] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-36_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,674] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-36_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,675] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-36_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,675] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PSC-36_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,675] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PSC-36_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,675] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PSC-36_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,675] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PSC-36_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,675] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PSC-36_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,675] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-36_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,697] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-36_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,698] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-59.sam [2024-05-26 11:02:13,698] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-63.sam [2024-05-26 11:02:13,698] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-73.sorted.bam.bai [2024-05-26 11:02:13,700] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-57_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,701] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-57_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,701] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-57_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,702] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-57_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,702] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PSC-57_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,702] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PSC-57_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,702] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PSC-57_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,702] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PSC-57_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,702] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PSC-57_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,702] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-57_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,722] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-57_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,723] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-61.sorted.bam [2024-05-26 11:02:13,724] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-78_02.sam [2024-05-26 11:02:13,724] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-48.sorted.bam.bai [2024-05-26 11:02:13,725] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-64_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,726] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-64_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,726] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-64_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,727] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-64_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,727] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PSC-64_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,727] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PSC-64_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,727] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PSC-64_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,727] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PSC-64_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,727] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 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[DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PSC-23_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,756] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-23_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,775] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-23_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,777] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-75.sam [2024-05-26 11:02:13,782] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-58_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,782] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-58_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,783] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-58_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,783] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-58_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,783] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PSC-58_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,783] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PSC-58_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,783] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PSC-58_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,783] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 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File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-36_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,808] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-36_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,809] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PSC-36_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,809] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PSC-36_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,809] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PSC-36_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,809] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 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multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PSC-38_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,838] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PSC-38_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,838] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PSC-38_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,838] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-38_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,861] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-38_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,864] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern 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[DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PSC-49_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,865] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PSC-49_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,865] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PSC-49_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,865] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-49_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,886] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-49_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,891] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-19.sorted.bam [2024-05-26 11:02:13,891] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-34.sorted.bam [2024-05-26 11:02:13,891] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-37.bam [2024-05-26 11:02:13,894] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-40_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,894] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-40_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,894] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-40_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,895] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-40_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,895] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PSC-40_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,895] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PSC-40_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,895] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PSC-40_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,895] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PSC-40_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,895] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PSC-40_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,895] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 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File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-78_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,952] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PSC-78_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,952] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PSC-78_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,952] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PSC-78_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,952] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PSC-78_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,952] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PSC-78_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,952] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-78_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,973] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-78_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,974] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-24.sam [2024-05-26 11:02:13,978] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-81.sorted.bam [2024-05-26 11:02:13,982] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-43.sam [2024-05-26 11:02:13,982] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-49_02.sam [2024-05-26 11:02:13,982] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-61.sam [2024-05-26 11:02:13,982] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-71.sorted.bam [2024-05-26 11:02:13,982] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-64.bam [2024-05-26 11:02:13,987] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-75_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,988] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-75_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,988] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-75_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,989] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-75_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:13,989] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 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11:02:14,010] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-75_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,011] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-63.sorted.bam.bai [2024-05-26 11:02:14,011] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-81.sam [2024-05-26 11:02:14,013] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-34_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,013] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-34_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,013] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-34_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,014] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-34_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,014] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PSC-34_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,014] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PSC-34_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,014] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PSC-34_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,014] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PSC-34_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,014] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 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pattern: PSC-19.bam [2024-05-26 11:02:14,043] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-52_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,043] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-52_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,043] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-52_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,044] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-52_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,044] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PSC-52_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,044] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PSC-52_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,044] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PSC-52_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,044] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PSC-52_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,044] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PSC-52_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,044] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-52_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,065] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-52_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,066] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-38.sorted.bam [2024-05-26 11:02:14,072] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-19_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,072] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-19_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,072] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-19_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,073] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-19_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,073] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PSC-19_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,073] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PSC-19_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,073] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PSC-19_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,073] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PSC-19_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,073] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PSC-19_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,073] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-19_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,094] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-19_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,097] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-37_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,097] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-37_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,097] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-37_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,098] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-37_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,098] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PSC-37_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,098] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PSC-37_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,098] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PSC-37_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,098] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PSC-37_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,098] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PSC-37_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,098] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-37_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,120] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-37_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,122] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-48.sam [2024-05-26 11:02:14,122] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-73.sorted.bam [2024-05-26 11:02:14,125] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-40_02.sam [2024-05-26 11:02:14,126] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-52_02.sam [2024-05-26 11:02:14,135] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-40.sorted.bam.bai [2024-05-26 11:02:14,135] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-34.sorted.bam.bai [2024-05-26 11:02:14,137] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-35_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,137] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-35_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,137] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-35_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,138] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-35_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,138] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PSC-35_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,138] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PSC-35_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,138] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PSC-35_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,138] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PSC-35_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,138] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PSC-35_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,138] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-35_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,173] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-35_R1_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,179] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-73.sam [2024-05-26 11:02:14,179] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-59.sorted.bam.bai [2024-05-26 11:02:14,182] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-34.bam [2024-05-26 11:02:14,184] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-38_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,184] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-38_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,184] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-38_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,185] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-38_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,185] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PSC-38_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,185] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PSC-38_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,185] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PSC-38_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,185] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PSC-38_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,185] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PSC-38_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,185] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-38_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,220] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-38_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,223] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-23.sorted.bam.bai [2024-05-26 11:02:14,223] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-64.sorted.bam [2024-05-26 11:02:14,225] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: PSC-71_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,225] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: PSC-71_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,226] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: PSC-71_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,226] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: PSC-71_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,226] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: PSC-71_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,226] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: PSC-71_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,226] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: PSC-71_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,226] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: PSC-71_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,226] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: PSC-71_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,226] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: PSC-71_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,248] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: PSC-71_R2_001.fastq.gz.fastp-trim.20220810_fastqc.html [2024-05-26 11:02:14,252] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: PSC-76.bam [2024-05-26 11:02:15,603] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2024-05-26 11:02:15,671] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Duplicate sample name found! Overwriting: hisat [2024-05-26 11:02:15,671] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Duplicate sample name found! Overwriting: hisat [2024-05-26 11:02:15,671] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Duplicate sample name found! Overwriting: hisat [2024-05-26 11:02:15,672] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Duplicate sample name found! Overwriting: hisat [2024-05-26 11:02:15,672] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Duplicate sample name found! Overwriting: hisat [2024-05-26 11:02:15,672] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Duplicate sample name found! Overwriting: hisat [2024-05-26 11:02:15,673] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Duplicate sample name found! Overwriting: hisat [2024-05-26 11:02:15,673] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Duplicate sample name found! Overwriting: hisat [2024-05-26 11:02:15,673] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Duplicate sample name found! Overwriting: hisat [2024-05-26 11:02:15,674] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Duplicate sample name found! Overwriting: hisat [2024-05-26 11:02:15,674] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Duplicate sample name found! Overwriting: hisat [2024-05-26 11:02:15,674] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Duplicate sample name found! Overwriting: hisat [2024-05-26 11:02:15,674] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Duplicate sample name found! Overwriting: hisat [2024-05-26 11:02:15,675] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Duplicate sample name found! Overwriting: hisat [2024-05-26 11:02:15,675] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Duplicate sample name found! Overwriting: hisat [2024-05-26 11:02:15,675] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Duplicate sample name found! Overwriting: hisat [2024-05-26 11:02:15,675] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Duplicate sample name found! Overwriting: hisat [2024-05-26 11:02:15,675] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Duplicate sample name found! Overwriting: hisat [2024-05-26 11:02:15,676] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Duplicate sample name found! Overwriting: hisat [2024-05-26 11:02:15,676] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Duplicate sample name found! Overwriting: hisat [2024-05-26 11:02:15,676] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Duplicate sample name found! Overwriting: hisat [2024-05-26 11:02:15,676] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Duplicate sample name found! Overwriting: hisat [2024-05-26 11:02:15,676] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Duplicate sample name found! Overwriting: hisat [2024-05-26 11:02:15,677] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Duplicate sample name found! Overwriting: hisat [2024-05-26 11:02:15,677] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Duplicate sample name found! Overwriting: hisat [2024-05-26 11:02:15,677] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Duplicate sample name found! Overwriting: hisat [2024-05-26 11:02:15,677] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Duplicate sample name found! Overwriting: hisat [2024-05-26 11:02:15,678] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Duplicate sample name found! Overwriting: hisat [2024-05-26 11:02:15,678] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Duplicate sample name found! Overwriting: hisat [2024-05-26 11:02:15,678] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Duplicate sample name found! Overwriting: hisat [2024-05-26 11:02:15,678] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Duplicate sample name found! Overwriting: hisat [2024-05-26 11:02:15,682] multiqc.modules.bowtie2.bowtie2 [INFO ] Found 33 reports [2024-05-26 11:02:15,734] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2024-05-26 11:02:20,501] multiqc.modules.fastqc.fastqc [INFO ] Found 64 reports [2024-05-26 11:02:22,371] multiqc [INFO ] Compressing plot data [2024-05-26 11:02:22,924] multiqc [WARNING] Previous MultiQC output found! Adjusting filenames.. [2024-05-26 11:02:22,924] multiqc [WARNING] Use -f or --force to overwrite existing reports instead [2024-05-26 11:02:22,924] multiqc [INFO ] Report : ../analyses/10-hisat-deseq2/multiqc_report_1.html [2024-05-26 11:02:22,925] multiqc [INFO ] Data : ../analyses/10-hisat-deseq2/multiqc_data_1 [2024-05-26 11:02:22,925] multiqc [DEBUG ] Moving data file from '/tmp/tmp18wjnvv0/multiqc_data' to '../analyses/10-hisat-deseq2/multiqc_data_1' [2024-05-26 11:02:23,128] multiqc [INFO ] MultiQC complete [2024-05-26 11:02:23,128] multiqc [WARNING] 1 flat-image plot used in the report due to large sample numbers