Index of /seashell/bu-github/paper-pycno-sswd-2021-2022/analyses/10-hisat-deseq2

[ICO]NameLast modifiedSizeDescription

[PARENTDIR]Parent Directory   -  
[VID]GCA_032158295.index...>2024-05-25 16:18 136M 
[VID]GCA_032158295.index...>2024-05-25 16:18 115M 
[VID]GCA_032158295.index...>2024-05-25 16:16 20K 
[   ]GCA_032158295.index...>2024-05-25 16:16 115M 
[VID]GCA_032158295.index...>2024-05-25 16:18 203M 
[VID]GCA_032158295.index...>2024-05-25 16:18 117M 
[   ]GCA_032158295.index...>2024-05-25 16:16 12  
[   ]GCA_032158295.index...>2024-05-25 16:16 8  
[   ]PSC-19.bam 2024-05-25 20:22 4.1G 
[   ]PSC-19.gtf 2024-05-31 13:08 27M 
[   ]PSC-19.sorted.bam 2024-05-25 20:24 2.2G 
[   ]PSC-19.sorted.bam.bai 2024-05-25 20:24 837K 
[   ]PSC-19_R1_001.fastq...>2024-05-26 06:39 605K 
[   ]PSC-19_R1_001.fastq...>2024-05-26 06:39 891K 
[   ]PSC-19_R2_001.fastq...>2024-05-26 06:39 612K 
[   ]PSC-19_R2_001.fastq...>2024-05-26 06:39 896K 
[TXT]PSC-19_hisat.stderr 2024-05-26 07:00 634  
[TXT]PSC-19_hisat.stdout 2024-05-26 06:53 0  
[TXT]PSC-19_hisat03.stderr 2024-05-29 16:41 634  
[TXT]PSC-19_hisat03.stdout 2024-05-29 16:34 0  
[TXT]PSC-19_string.stderr 2024-05-31 13:08 0  
[TXT]PSC-19_string.stdout 2024-05-31 13:08 0  
[   ]PSC-19_unmapped_read..>2024-05-29 16:41 1.9G 
[   ]PSC-19_unmapped_read..>2024-05-29 16:41 1.9G 
[TXT]PSC-19_unmapped_read..>2024-05-29 14:31 0  
[   ]PSC-23.bam 2024-05-25 20:27 4.1G 
[   ]PSC-23.gtf 2024-05-31 13:09 27M 
[   ]PSC-23.sorted.bam 2024-05-25 20:29 2.3G 
[   ]PSC-23.sorted.bam.bai 2024-05-25 20:30 876K 
[   ]PSC-23_R1_001.fastq...>2024-05-26 06:39 607K 
[   ]PSC-23_R1_001.fastq...>2024-05-26 06:39 898K 
[   ]PSC-23_R2_001.fastq...>2024-05-26 06:40 616K 
[   ]PSC-23_R2_001.fastq...>2024-05-26 06:40 910K 
[TXT]PSC-23_hisat.stderr 2024-05-26 07:07 634  
[TXT]PSC-23_hisat.stdout 2024-05-26 07:00 0  
[TXT]PSC-23_hisat03.stderr 2024-05-29 16:48 634  
[TXT]PSC-23_hisat03.stdout 2024-05-29 16:41 0  
[TXT]PSC-23_string.stderr 2024-05-31 13:09 0  
[TXT]PSC-23_string.stdout 2024-05-31 13:09 0  
[   ]PSC-23_unmapped_read..>2024-05-29 16:48 2.1G 
[   ]PSC-23_unmapped_read..>2024-05-29 16:48 2.1G 
[TXT]PSC-23_unmapped_read..>2024-05-29 14:39 0  
[   ]PSC-24.bam 2024-05-25 20:32 3.9G 
[   ]PSC-24.gtf 2024-05-31 13:10 27M 
[   ]PSC-24.sorted.bam 2024-05-25 20:35 2.2G 
[   ]PSC-24.sorted.bam.bai 2024-05-25 20:35 808K 
[   ]PSC-24_R1_001.fastq...>2024-05-26 06:39 611K 
[   ]PSC-24_R1_001.fastq...>2024-05-26 06:39 896K 
[   ]PSC-24_R2_001.fastq...>2024-05-26 06:39 618K 
[   ]PSC-24_R2_001.fastq...>2024-05-26 06:39 904K 
[TXT]PSC-24_hisat.stderr 2024-05-26 07:13 635  
[TXT]PSC-24_hisat.stdout 2024-05-26 07:07 0  
[TXT]PSC-24_hisat03.stderr 2024-05-29 16:55 635  
[TXT]PSC-24_hisat03.stdout 2024-05-29 16:48 0  
[TXT]PSC-24_string.stderr 2024-05-31 13:10 0  
[TXT]PSC-24_string.stdout 2024-05-31 13:10 0  
[   ]PSC-24_unmapped_read..>2024-05-29 16:55 2.4G 
[   ]PSC-24_unmapped_read..>2024-05-29 16:55 2.4G 
[TXT]PSC-24_unmapped_read..>2024-05-29 08:44 0  
[   ]PSC-34.bam 2024-05-25 20:38 2.9G 
[   ]PSC-34.gtf 2024-05-31 13:10 27M 
[   ]PSC-34.sorted.bam 2024-05-25 20:40 2.5G 
[   ]PSC-34.sorted.bam.bai 2024-05-25 20:40 446K 
[   ]PSC-34_R1_001.fastq...>2024-05-26 06:40 636K 
[   ]PSC-34_R1_001.fastq...>2024-05-26 06:40 928K 
[   ]PSC-34_R2_001.fastq...>2024-05-26 06:40 640K 
[   ]PSC-34_R2_001.fastq...>2024-05-26 06:40 930K 
[TXT]PSC-34_hisat.stderr 2024-05-26 07:21 631  
[TXT]PSC-34_hisat.stdout 2024-05-26 07:13 0  
[TXT]PSC-34_hisat03.stderr 2024-05-29 17:03 631  
[TXT]PSC-34_hisat03.stdout 2024-05-29 16:55 0  
[TXT]PSC-34_string.stderr 2024-05-31 13:10 0  
[TXT]PSC-34_string.stdout 2024-05-31 13:10 0  
[   ]PSC-34_unmapped_read..>2024-05-29 17:03 8.8G 
[   ]PSC-34_unmapped_read..>2024-05-29 17:03 8.8G 
[TXT]PSC-34_unmapped_read..>2024-05-29 08:50 0  
[   ]PSC-35.bam 2024-05-25 20:43 2.9G 
[   ]PSC-35.gtf 2024-05-31 13:11 27M 
[   ]PSC-35.sorted.bam 2024-05-25 20:45 2.4G 
[   ]PSC-35.sorted.bam.bai 2024-05-25 20:46 485K 
[   ]PSC-35_R1_001.fastq...>2024-05-26 06:39 631K 
[   ]PSC-35_R1_001.fastq...>2024-05-26 06:39 922K 
[   ]PSC-35_R2_001.fastq...>2024-05-26 06:39 642K 
[   ]PSC-35_R2_001.fastq...>2024-05-26 06:39 937K 
[TXT]PSC-35_hisat.stderr 2024-05-26 07:28 633  
[TXT]PSC-35_hisat.stdout 2024-05-26 07:21 0  
[TXT]PSC-35_hisat03.stderr 2024-05-29 17:11 633  
[TXT]PSC-35_hisat03.stdout 2024-05-29 17:03 0  
[TXT]PSC-35_string.stderr 2024-05-31 13:11 0  
[TXT]PSC-35_string.stdout 2024-05-31 13:11 0  
[   ]PSC-35_unmapped_read..>2024-05-29 17:11 7.7G 
[   ]PSC-35_unmapped_read..>2024-05-29 17:11 7.7G 
[TXT]PSC-35_unmapped_read..>2024-05-29 08:58 0  
[   ]PSC-36.bam 2024-05-25 20:48 2.5G 
[   ]PSC-36.gtf 2024-05-31 13:11 27M 
[   ]PSC-36.sorted.bam 2024-05-25 20:49 1.9G 
[   ]PSC-36.sorted.bam.bai 2024-05-25 20:49 510K 
[   ]PSC-36_R1_001.fastq...>2024-05-26 06:37 629K 
[   ]PSC-36_R1_001.fastq...>2024-05-26 06:37 926K 
[   ]PSC-36_R2_001.fastq...>2024-05-26 06:38 639K 
[   ]PSC-36_R2_001.fastq...>2024-05-26 06:38 936K 
[TXT]PSC-36_hisat.stderr 2024-05-26 07:34 634  
[TXT]PSC-36_hisat.stdout 2024-05-26 07:28 0  
[TXT]PSC-36_hisat03.stderr 2024-05-29 17:17 634  
[TXT]PSC-36_hisat03.stdout 2024-05-29 17:11 0  
[TXT]PSC-36_string.stderr 2024-05-31 13:11 0  
[TXT]PSC-36_string.stdout 2024-05-31 13:11 0  
[   ]PSC-36_unmapped_read..>2024-05-29 17:17 5.6G 
[   ]PSC-36_unmapped_read..>2024-05-29 17:17 5.6G 
[TXT]PSC-36_unmapped_read..>2024-05-29 09:05 0  
[   ]PSC-37.bam 2024-05-25 20:51 1.8G 
[   ]PSC-37.gtf 2024-05-31 13:12 27M 
[   ]PSC-37.sorted.bam 2024-05-25 20:52 1.6G 
[   ]PSC-37.sorted.bam.bai 2024-05-25 20:52 426K 
[   ]PSC-37_R1_001.fastq...>2024-05-26 06:36 635K 
[   ]PSC-37_R1_001.fastq...>2024-05-26 06:36 927K 
[   ]PSC-37_R2_001.fastq...>2024-05-26 06:36 638K 
[   ]PSC-37_R2_001.fastq...>2024-05-26 06:36 934K 
[TXT]PSC-37_hisat.stderr 2024-05-26 07:39 631  
[TXT]PSC-37_hisat.stdout 2024-05-26 07:34 0  
[TXT]PSC-37_hisat03.stderr 2024-05-29 17:22 631  
[TXT]PSC-37_hisat03.stdout 2024-05-29 17:17 0  
[TXT]PSC-37_string.stderr 2024-05-31 13:12 0  
[TXT]PSC-37_string.stdout 2024-05-31 13:12 0  
[   ]PSC-37_unmapped_read..>2024-05-29 17:22 5.3G 
[   ]PSC-37_unmapped_read..>2024-05-29 17:22 5.3G 
[TXT]PSC-37_unmapped_read..>2024-05-29 09:11 0  
[   ]PSC-38.bam 2024-05-25 20:54 3.0G 
[   ]PSC-38.gtf 2024-05-31 13:12 27M 
[   ]PSC-38.sorted.bam 2024-05-25 20:57 2.6G 
[   ]PSC-38.sorted.bam.bai 2024-05-25 20:57 475K 
[   ]PSC-38_R1_001.fastq...>2024-05-26 06:40 633K 
[   ]PSC-38_R1_001.fastq...>2024-05-26 06:40 928K 
[   ]PSC-38_R2_001.fastq...>2024-05-26 06:40 637K 
[   ]PSC-38_R2_001.fastq...>2024-05-26 06:40 932K 
[TXT]PSC-38_hisat.stderr 2024-05-26 07:47 632  
[TXT]PSC-38_hisat.stdout 2024-05-26 07:39 0  
[TXT]PSC-38_hisat03.stderr 2024-05-29 17:30 632  
[TXT]PSC-38_hisat03.stdout 2024-05-29 17:22 0  
[TXT]PSC-38_string.stderr 2024-05-31 13:12 0  
[TXT]PSC-38_string.stdout 2024-05-31 13:12 0  
[   ]PSC-38_unmapped_read..>2024-05-29 17:30 8.8G 
[   ]PSC-38_unmapped_read..>2024-05-29 17:30 8.8G 
[TXT]PSC-38_unmapped_read..>2024-05-29 09:16 0  
[   ]PSC-39.bam 2024-05-25 21:00 2.2G 
[   ]PSC-39.gtf 2024-05-31 13:13 27M 
[   ]PSC-39.sorted.bam 2024-05-25 21:02 1.8G 
[   ]PSC-39.sorted.bam.bai 2024-05-25 21:02 509K 
[   ]PSC-39_R1_001.fastq...>2024-05-26 06:37 643K 
[   ]PSC-39_R1_001.fastq...>2024-05-26 06:37 944K 
[   ]PSC-39_R2_001.fastq...>2024-05-26 06:37 646K 
[   ]PSC-39_R2_001.fastq...>2024-05-26 06:37 941K 
[TXT]PSC-39_hisat.stderr 2024-05-26 07:54 633  
[TXT]PSC-39_hisat.stdout 2024-05-26 07:47 0  
[TXT]PSC-39_hisat03.stderr 2024-05-29 17:36 633  
[TXT]PSC-39_hisat03.stdout 2024-05-29 17:30 0  
[TXT]PSC-39_string.stderr 2024-05-31 13:13 0  
[TXT]PSC-39_string.stdout 2024-05-31 13:13 0  
[   ]PSC-39_unmapped_read..>2024-05-29 17:36 6.8G 
[   ]PSC-39_unmapped_read..>2024-05-29 17:36 6.7G 
[TXT]PSC-39_unmapped_read..>2024-05-29 09:24 0  
[   ]PSC-40.bam 2024-05-25 21:04 2.3G 
[   ]PSC-40.gtf 2024-05-31 13:13 27M 
[   ]PSC-40.sorted.bam 2024-05-25 21:06 1.9G 
[   ]PSC-40.sorted.bam.bai 2024-05-25 21:06 473K 
[   ]PSC-40_R1_001.fastq...>2024-05-26 06:37 636K 
[   ]PSC-40_R1_001.fastq...>2024-05-26 06:37 930K 
[   ]PSC-40_R2_001.fastq...>2024-05-26 06:37 638K 
[   ]PSC-40_R2_001.fastq...>2024-05-26 06:37 932K 
[TXT]PSC-40_hisat.stderr 2024-05-26 07:59 632  
[TXT]PSC-40_hisat.stdout 2024-05-26 07:54 0  
[TXT]PSC-40_hisat03.stderr 2024-05-29 17:42 632  
[TXT]PSC-40_hisat03.stdout 2024-05-29 17:36 0  
[TXT]PSC-40_string.stderr 2024-05-31 13:13 0  
[TXT]PSC-40_string.stdout 2024-05-31 13:13 0  
[   ]PSC-40_unmapped_read..>2024-05-29 17:42 6.4G 
[   ]PSC-40_unmapped_read..>2024-05-29 17:42 6.4G 
[TXT]PSC-40_unmapped_read..>2024-05-29 09:31 0  
[   ]PSC-42.bam 2024-05-25 21:08 3.7G 
[   ]PSC-42.gtf 2024-05-31 13:14 27M 
[   ]PSC-42.sorted.bam 2024-05-25 21:11 2.0G 
[   ]PSC-42.sorted.bam.bai 2024-05-25 21:11 857K 
[   ]PSC-42_R1_001.fastq...>2024-05-26 06:38 611K 
[   ]PSC-42_R1_001.fastq...>2024-05-26 06:38 895K 
[   ]PSC-42_R2_001.fastq...>2024-05-26 06:38 617K 
[   ]PSC-42_R2_001.fastq...>2024-05-26 06:38 903K 
[TXT]PSC-42_hisat.stderr 2024-05-26 08:05 634  
[TXT]PSC-42_hisat.stdout 2024-05-26 07:59 0  
[TXT]PSC-42_hisat03.stderr 2024-05-29 17:49 634  
[TXT]PSC-42_hisat03.stdout 2024-05-29 17:42 0  
[TXT]PSC-42_string.stderr 2024-05-31 13:14 0  
[TXT]PSC-42_string.stdout 2024-05-31 13:14 0  
[   ]PSC-42_unmapped_read..>2024-05-29 17:49 1.8G 
[   ]PSC-42_unmapped_read..>2024-05-29 17:49 1.8G 
[TXT]PSC-42_unmapped_read..>2024-05-29 09:37 0  
[   ]PSC-43.bam 2024-05-25 21:13 3.9G 
[   ]PSC-43.gtf 2024-05-31 13:15 27M 
[   ]PSC-43.sorted.bam 2024-05-25 21:16 2.1G 
[   ]PSC-43.sorted.bam.bai 2024-05-25 21:16 818K 
[   ]PSC-43_R1_001.fastq...>2024-05-26 06:39 611K 
[   ]PSC-43_R1_001.fastq...>2024-05-26 06:39 900K 
[   ]PSC-43_R2_001.fastq...>2024-05-26 06:39 615K 
[   ]PSC-43_R2_001.fastq...>2024-05-26 06:39 908K 
[TXT]PSC-43_hisat.stderr 2024-05-26 08:11 634  
[TXT]PSC-43_hisat.stdout 2024-05-26 08:05 0  
[TXT]PSC-43_hisat03.stderr 2024-05-29 17:55 634  
[TXT]PSC-43_hisat03.stdout 2024-05-29 17:49 0  
[TXT]PSC-43_string.stderr 2024-05-31 13:15 0  
[TXT]PSC-43_string.stdout 2024-05-31 13:15 0  
[   ]PSC-43_unmapped_read..>2024-05-29 17:55 1.8G 
[   ]PSC-43_unmapped_read..>2024-05-29 17:55 1.8G 
[TXT]PSC-43_unmapped_read..>2024-05-29 09:42 0  
[   ]PSC-48.bam 2024-05-25 21:18 3.3G 
[   ]PSC-48.gtf 2024-05-31 13:15 27M 
[   ]PSC-48.sorted.bam 2024-05-25 21:20 1.9G 
[   ]PSC-48.sorted.bam.bai 2024-05-25 21:21 750K 
[   ]PSC-48_R1_001.fastq...>2024-05-26 06:37 613K 
[   ]PSC-48_R1_001.fastq...>2024-05-26 06:37 896K 
[   ]PSC-48_R2_001.fastq...>2024-05-26 06:38 617K 
[   ]PSC-48_R2_001.fastq...>2024-05-26 06:38 900K 
[TXT]PSC-48_hisat.stderr 2024-05-26 08:17 634  
[TXT]PSC-48_hisat.stdout 2024-05-26 08:11 0  
[TXT]PSC-48_hisat03.stderr 2024-05-29 18:00 634  
[TXT]PSC-48_hisat03.stdout 2024-05-29 17:55 0  
[TXT]PSC-48_string.stderr 2024-05-31 13:15 0  
[TXT]PSC-48_string.stdout 2024-05-31 13:15 0  
[   ]PSC-48_unmapped_read..>2024-05-29 18:00 1.8G 
[   ]PSC-48_unmapped_read..>2024-05-29 18:00 1.8G 
[TXT]PSC-48_unmapped_read..>2024-05-29 09:49 0  
[   ]PSC-49.bam 2024-05-25 21:23 3.8G 
[   ]PSC-49.gtf 2024-05-31 13:16 27M 
[   ]PSC-49.sorted.bam 2024-05-25 21:26 2.1G 
[   ]PSC-49.sorted.bam.bai 2024-05-25 21:26 811K 
[   ]PSC-49_R1_001.fastq...>2024-05-26 06:38 610K 
[   ]PSC-49_R1_001.fastq...>2024-05-26 06:38 892K 
[   ]PSC-49_R2_001.fastq...>2024-05-26 06:39 612K 
[   ]PSC-49_R2_001.fastq...>2024-05-26 06:39 896K 
[TXT]PSC-49_hisat.stderr 2024-05-26 08:22 634  
[TXT]PSC-49_hisat.stdout 2024-05-26 08:17 0  
[TXT]PSC-49_hisat03.stderr 2024-05-29 18:07 634  
[TXT]PSC-49_hisat03.stdout 2024-05-29 18:01 0  
[TXT]PSC-49_string.stderr 2024-05-31 13:16 0  
[TXT]PSC-49_string.stdout 2024-05-31 13:16 0  
[   ]PSC-49_unmapped_read..>2024-05-29 18:07 2.1G 
[   ]PSC-49_unmapped_read..>2024-05-29 18:07 2.1G 
[TXT]PSC-49_unmapped_read..>2024-05-29 09:54 0  
[   ]PSC-52.bam 2024-05-25 21:28 3.9G 
[   ]PSC-52.gtf 2024-05-31 13:16 27M 
[   ]PSC-52.sorted.bam 2024-05-25 21:31 2.2G 
[   ]PSC-52.sorted.bam.bai 2024-05-25 21:31 847K 
[   ]PSC-52_R1_001.fastq...>2024-05-26 06:38 606K 
[   ]PSC-52_R1_001.fastq...>2024-05-26 06:38 893K 
[   ]PSC-52_R2_001.fastq...>2024-05-26 06:39 610K 
[   ]PSC-52_R2_001.fastq...>2024-05-26 06:39 900K 
[TXT]PSC-52_hisat.stderr 2024-05-26 08:28 634  
[TXT]PSC-52_hisat.stdout 2024-05-26 08:22 0  
[TXT]PSC-52_hisat03.stderr 2024-05-29 18:13 634  
[TXT]PSC-52_hisat03.stdout 2024-05-29 18:07 0  
[TXT]PSC-52_string.stderr 2024-05-31 13:16 0  
[TXT]PSC-52_string.stdout 2024-05-31 13:16 0  
[   ]PSC-52_unmapped_read..>2024-05-29 18:13 2.0G 
[   ]PSC-52_unmapped_read..>2024-05-29 18:13 2.0G 
[TXT]PSC-52_unmapped_read..>2024-05-29 10:00 0  
[   ]PSC-54.bam 2024-05-25 21:34 4.3G 
[   ]PSC-54.gtf 2024-05-31 13:18 27M 
[   ]PSC-54.sorted.bam 2024-05-25 21:37 2.4G 
[   ]PSC-54.sorted.bam.bai 2024-05-25 21:37 902K 
[   ]PSC-54_R1_001.fastq...>2024-05-26 06:40 606K 
[   ]PSC-54_R1_001.fastq...>2024-05-26 06:40 889K 
[   ]PSC-54_R2_001.fastq...>2024-05-26 06:40 613K 
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[TXT]PSC-54_hisat.stderr 2024-05-26 08:35 634  
[TXT]PSC-54_hisat.stdout 2024-05-26 08:28 0  
[TXT]PSC-54_hisat03.stderr 2024-05-29 18:20 634  
[TXT]PSC-54_hisat03.stdout 2024-05-29 18:13 0  
[TXT]PSC-54_string.stderr 2024-05-31 13:18 0  
[TXT]PSC-54_string.stdout 2024-05-31 13:18 0  
[   ]PSC-54_unmapped_read..>2024-05-29 18:20 2.1G 
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[TXT]PSC-54_unmapped_read..>2024-05-29 10:06 0  
[   ]PSC-56.bam 2024-05-25 21:39 3.6G 
[   ]PSC-56.gtf 2024-05-31 13:19 27M 
[   ]PSC-56.sorted.bam 2024-05-25 21:42 2.0G 
[   ]PSC-56.sorted.bam.bai 2024-05-25 21:42 773K 
[   ]PSC-56_R1_001.fastq...>2024-05-26 06:38 611K 
[   ]PSC-56_R1_001.fastq...>2024-05-26 06:38 897K 
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[TXT]PSC-56_hisat.stderr 2024-05-26 08:41 635  
[TXT]PSC-56_hisat.stdout 2024-05-26 08:35 0  
[TXT]PSC-56_hisat03.stderr 2024-05-29 18:26 635  
[TXT]PSC-56_hisat03.stdout 2024-05-29 18:20 0  
[TXT]PSC-56_string.stderr 2024-05-31 13:19 0  
[TXT]PSC-56_string.stdout 2024-05-31 13:19 0  
[   ]PSC-56_unmapped_read..>2024-05-29 18:26 2.2G 
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[TXT]PSC-56_unmapped_read..>2024-05-29 10:13 0  
[   ]PSC-57.bam 2024-05-25 21:45 4.0G 
[   ]PSC-57.gtf 2024-05-31 13:20 27M 
[   ]PSC-57.sorted.bam 2024-05-25 21:47 2.1G 
[   ]PSC-57.sorted.bam.bai 2024-05-25 21:47 782K 
[   ]PSC-57_R1_001.fastq...>2024-05-26 06:39 611K 
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[DIR]trinity/ 2024-05-30 07:38 -