Nextflow workflow report

[special_mcclintock]

Workflow execution completed successfully!
Run times
07-Jul-2022 12:27:19 - 07-Jul-2022 16:55:07 (duration: 4h 27m 49s)
  92 succeeded  
  0 cached  
  0 ignored  
  0 failed  
Nextflow command
nextflow run epidiverse/snp -c nfx.config -profile docker --input ../data/bgdata/v98/ --reference ../data/bgdata/Olurida_v081-mergecat98.fa --coverage 5 --output ../analyses/21-epidiverse/run01
CPU-Hours
152.7
Launch directory
/home/shared/8TB_HDD_01/sr320/github/paper-oly-mbdbs-gen/code
Work directory
/home/shared/8TB_HDD_01/sr320/github/paper-oly-mbdbs-gen/code/work
Project directory
/home/sr320/.nextflow/assets/epidiverse/snp
Script name
main.nf
Script ID
b0e299ed332648922c66d8a020a05bca
Workflow session
d050dd3b-0973-4ea6-aa63-3dc090359a1e
Workflow repository
https://github.com/EpiDiverse/snp.git, revision master (commit hash 9c814703c690c2ade21c4586b36159940e092a4e)
Workflow profile
docker
Workflow container
epidiverse/snp:1.0
Container engine
docker
Nextflow version
version 20.07.1, build 5412 (24-07-2020 15:18 UTC)

Resource Usage

These plots give an overview of the distribution of resource usage for each process.

CPU

Memory

Job Duration

I/O

Tasks

This table shows information about each task in the workflow. Use the search box on the right to filter rows for specific values. Clicking headers will sort the table by that value and scrolling side to side will reveal more columns.

(tasks table omitted because the dataset is too big)