This is Cgigas data shared from Sascha@ucsd


Note about the data from Sascha:

looking back, I used the grinder as in Hetzel. That allowed me to also prep nuclei for ATAC/GRO. However, the RNA was RiN 3, so shitty. csRNA-seq still works but it's obviously better with less fragmented RNA. The TSS were also called with V.1 of Chris's software. Hope to rerun TSS finding on all species soon again which should clean things up a little. I'll send the new data then

note that there should be two types of tissues

ID 	Sample Name 	Species 	USE? (1=best, 2=2nd etc bad=discard, maybe=save but bad) 	Misc 	Adapters 	IDX 	Comments 	[ng/ul] 	avrg. Length 	nM 	PCR
JHS 670 	Oyster1_Brachies_6_csRNA-seq 	Oyster - Crassostrea gigas 	  	  	NEB 	17 	  	0.1 	180 	0.8418 	 
JHS 671 	Oyster2_Brachies_7_csRNA-seq 	Oyster - Crassostrea gigas 	  	  	NEB 	18 	  	1.55 	180 	13.047 	 
JHS 696 	Oyster1_Brachies_6_ATAC 	Oyster - Crassostrea gigas 	  	  	ATAC 	ATAC7 	  	0.605 	200 	4.5833 	14
JHS 697 	Oyster2_Brachies_7_ATAC 	Oyster - Crassostrea gigas 	  	  	ATAC 	ATAC6 	  	0.714 	200 	5.4091 	14
JHS 698 	Oyster1_Coeur_8_ATAC 	Oyster - Crassostrea gigas 	  	  	ATAC 	ATAC8 	  	0.96 	200 	7.2727 	12
JHS 699 	Oyster2_Coeur_9_ATAC 	Oyster - Crassostrea gigas 	  	  	ATAC 	ATAC7 	  	1.4 	200 	10.606 	12
JHS 796 	Oyster_8_csRNA-seq_input 	Oyster - Crassostrea gigas 	  	  	NEB 	19 	  	1.09 	180 	9.1751 	 
JHS 797 	Oyster_9_csRNA-seq_input 	Oyster - Crassostrea gigas 	  	  	NEB 	20 	  	0.907 	180 	7.6347 	 
JHS 817 	Oyster_8_csRNA-seq 	Oyster - Crassostrea gigas 	  	  	NEB 	22 	  	4.54 	180 	38.215 	 
JHS 818 	Oyster_9_csRNA-seq 	Oyster - Crassostrea gigas 	  	  	NEB 	24 	  	2.56 	180 	21.549 	 

I also saw some 5'GRO IGV in there. not sure if it's useful so I sent it anyway :p