The exit status of the task that caused the workflow execution to fail was: 127
.
The full error message was:
Error executing process > 'SNPS:preprocessing (sample1)' Caused by: Process `SNPS:preprocessing (sample1)` terminated with an error exit status (127) Command executed: samtools sort -T deleteme -m 966367642 -@ 4 \ -o sorted.bam sample1.bam || exit $? samtools calmd -b sorted.bam genome.fa 1> calmd.bam 2> /dev/null && rm sorted.bam samtools index calmd.bam Command exit status: 127 Command output: (empty) Command error: .command.sh: line 2: samtools: command not found Work dir: /home/shared/8TB_HDD_01/sr320/github/nb-2022/work/66/98ca96794904c6379d1f997f9cf631 Tip: view the complete command output by changing to the process work dir and entering the command `cat .command.out`
nextflow run epidiverse/snp -profile test, docker
b0e299ed332648922c66d8a020a05bca
026c4dd0-8ba9-40cb-a862-9b36a8cd7339
https://github.com/epidiverse/snp
, revision master
(commit hash 9c814703c690c2ade21c4586b36159940e092a4e
)These plots give an overview of the distribution of resource usage for each process.
This table shows information about each task in the workflow. Use the search box on the right to filter rows for specific values. Clicking headers will sort the table by that value and scrolling side to side will reveal more columns.