[quant] fragment length distribution will be estimated from the data
[index] k-mer length: 31
[index] number of targets: 1,363,959
[index] number of k-mers: 374,041,821
[index] number of equivalence classes: 4,408,869
[quant] running in paired-end mode
[quant] will process pair 1: /home/shared/8TB_HDD_01/sr320/ncbi/SRR12212519_1.fastq
                             /home/shared/8TB_HDD_01/sr320/ncbi/SRR12212519_2.fastq
[quant] will process pair 2: /home/shared/8TB_HDD_01/sr320/ncbi/SRR12227929_1.fastq
                             /home/shared/8TB_HDD_01/sr320/ncbi/SRR12227929_2.fastq
[quant] will process pair 3: /home/shared/8TB_HDD_01/sr320/ncbi/SRR8788211_1.fastq
                             /home/shared/8TB_HDD_01/sr320/ncbi/SRR8788211_2.fastq
[quant] finding pseudoalignments for the reads ... done
[quant] processed 72,973,389 reads, 52,916,017 reads pseudoaligned
[quant] estimated average fragment length: 192.292
[   em] quantifying the abundances ... done
[   em] the Expectation-Maximization algorithm ran for 1,374 rounds