[quant] fragment length distribution will be estimated from the data [index] k-mer length: 31 [index] number of targets: 1,363,959 [index] number of k-mers: 374,041,821 [index] number of equivalence classes: 4,408,869 [quant] running in paired-end mode [quant] will process pair 1: /home/shared/8TB_HDD_01/sr320/ncbi/SRR12207406_1.fastq /home/shared/8TB_HDD_01/sr320/ncbi/SRR12207406_2.fastq [quant] will process pair 2: /home/shared/8TB_HDD_01/sr320/ncbi/SRR12207407_1.fastq /home/shared/8TB_HDD_01/sr320/ncbi/SRR12207407_2.fastq [quant] will process pair 3: /home/shared/8TB_HDD_01/sr320/ncbi/SRR12227931_1.fastq /home/shared/8TB_HDD_01/sr320/ncbi/SRR12227931_2.fastq [quant] finding pseudoalignments for the reads ... done [quant] processed 171,612,541 reads, 128,785,637 reads pseudoaligned [quant] estimated average fragment length: 180.347 [ em] quantifying the abundances ... done [ em] the Expectation-Maximization algorithm ran for 1,401 rounds