diamond v2.0.4.142 (C) Max Planck Society for the Advancement of Science
Documentation, support and updates available at http://www.diamondsearch.org

#CPU threads: 28
Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
Temporary directory: 
Opening the database...  [0.441s]
Percentage range of top alignment score to report hits: 10
Reference = /gscratch/srlab/blastdbs/ncbi-nr-20200924/nr.dmnd
Sequences = 316065422
Letters = 113949932586
Block size = 8000000000
Opening the input file...  [0.042s]
Opening the output file...  [0s]
Loading query sequences...  [6.887s]
Masking queries...  [2.969s]
Building query seed set...  [0.072s]
Algorithm: Double-indexed
Building query histograms...  [0.949s]
Allocating buffers...  [0s]
Loading reference sequences...  [16.348s]
Masking reference...  [19.52s]
Initializing temporary storage...  [0.016s]
Building reference histograms...  [7.048s]
Allocating buffers...  [0s]
Processing query block 1, reference block 1/15, shape 1/2.
Building reference seed array...  [6.703s]
Building query seed array...  [0.689s]
Computing hash join...  [9.806s]
Building seed filter...  [0.379s]
Searching alignments...  [14.846s]
Processing query block 1, reference block 1/15, shape 2/2.
Building reference seed array...  [6.017s]
Building query seed array...  [0.651s]
Computing hash join...  [9.685s]
Building seed filter...  [0.357s]
Searching alignments...  [13.567s]
Deallocating buffers...  [0.206s]
Clearing query masking...  [0.249s]
Opening temporary output file...  [0.001s]
Computing alignments...  [135.432s]
Deallocating reference...  [0.039s]
Loading reference sequences...  [15.571s]
Masking reference...  [18.686s]
Initializing temporary storage...  [0.01s]
Building reference histograms...  [7.613s]
Allocating buffers...  [0s]
Processing query block 1, reference block 2/15, shape 1/2.
Building reference seed array...  [6.614s]
Building query seed array...  [0.665s]
Computing hash join...  [9.856s]
Building seed filter...  [0.38s]
Searching alignments...  [14.698s]
Processing query block 1, reference block 2/15, shape 2/2.
Building reference seed array...  [6.009s]
Building query seed array...  [0.649s]
Computing hash join...  [9.707s]
Building seed filter...  [0.359s]
Searching alignments...  [13.69s]
Deallocating buffers...  [0.21s]
Clearing query masking...  [0.276s]
Opening temporary output file...  [0.012s]
Computing alignments...  [130.057s]
Deallocating reference...  [0.038s]
Loading reference sequences...  [15.783s]
Masking reference...  [19.489s]
Initializing temporary storage...  [0.009s]
Building reference histograms...  [7.177s]
Allocating buffers...  [0s]
Processing query block 1, reference block 3/15, shape 1/2.
Building reference seed array...  [6.534s]
Building query seed array...  [0.654s]
Computing hash join...  [9.784s]
Building seed filter...  [0.378s]
Searching alignments...  [14.694s]
Processing query block 1, reference block 3/15, shape 2/2.
Building reference seed array...  [6.003s]
Building query seed array...  [0.646s]
Computing hash join...  [9.655s]
Building seed filter...  [0.358s]
Searching alignments...  [13.557s]
Deallocating buffers...  [0.217s]
Clearing query masking...  [0.278s]
Opening temporary output file...  [0.002s]
Computing alignments...  [126.85s]
Deallocating reference...  [0.039s]
Loading reference sequences...  [15.683s]
Masking reference...  [18.675s]
Initializing temporary storage...  [0.009s]
Building reference histograms...  [7.575s]
Allocating buffers...  [0s]
Processing query block 1, reference block 4/15, shape 1/2.
Building reference seed array...  [6.652s]
Building query seed array...  [0.721s]
Computing hash join...  [9.803s]
Building seed filter...  [0.369s]
Searching alignments...  [14.738s]
Processing query block 1, reference block 4/15, shape 2/2.
Building reference seed array...  [5.983s]
Building query seed array...  [0.637s]
Computing hash join...  [9.727s]
Building seed filter...  [0.36s]
Searching alignments...  [13.48s]
Deallocating buffers...  [0.21s]
Clearing query masking...  [0.275s]
Opening temporary output file...  [0.001s]
Computing alignments...  [130.398s]
Deallocating reference...  [0.039s]
Loading reference sequences...  [15.634s]
Masking reference...  [19.495s]
Initializing temporary storage...  [0.009s]
Building reference histograms...  [7.014s]
Allocating buffers...  [0s]
Processing query block 1, reference block 5/15, shape 1/2.
Building reference seed array...  [6.529s]
Building query seed array...  [0.651s]
Computing hash join...  [9.803s]
Building seed filter...  [0.361s]
Searching alignments...  [14.529s]
Processing query block 1, reference block 5/15, shape 2/2.
Building reference seed array...  [6.05s]
Building query seed array...  [0.655s]
Computing hash join...  [9.679s]
Building seed filter...  [0.359s]
Searching alignments...  [13.589s]
Deallocating buffers...  [0.225s]
Clearing query masking...  [0.278s]
Opening temporary output file...  [0.001s]
Computing alignments...  [127.686s]
Deallocating reference...  [0.038s]
Loading reference sequences...  [15.781s]
Masking reference...  [19.755s]
Initializing temporary storage...  [0.008s]
Building reference histograms...  [7.785s]
Allocating buffers...  [0s]
Processing query block 1, reference block 6/15, shape 1/2.
Building reference seed array...  [6.559s]
Building query seed array...  [0.662s]
Computing hash join...  [9.854s]
Building seed filter...  [0.436s]
Searching alignments...  [14.325s]
Processing query block 1, reference block 6/15, shape 2/2.
Building reference seed array...  [6.043s]
Building query seed array...  [0.657s]
Computing hash join...  [9.73s]
Building seed filter...  [0.357s]
Searching alignments...  [14.793s]
Deallocating buffers...  [0.208s]
Clearing query masking...  [0.26s]
Opening temporary output file...  [0.001s]
Computing alignments...  [127.236s]
Deallocating reference...  [0.039s]
Loading reference sequences...  [15.659s]
Masking reference...  [18.646s]
Initializing temporary storage...  [0.01s]
Building reference histograms...  [7.107s]
Allocating buffers...  [0s]
Processing query block 1, reference block 7/15, shape 1/2.
Building reference seed array...  [6.534s]
Building query seed array...  [0.695s]
Computing hash join...  [9.802s]
Building seed filter...  [0.369s]
Searching alignments...  [14.511s]
Processing query block 1, reference block 7/15, shape 2/2.
Building reference seed array...  [6.025s]
Building query seed array...  [0.646s]
Computing hash join...  [9.694s]
Building seed filter...  [0.359s]
Searching alignments...  [13.604s]
Deallocating buffers...  [0.21s]
Clearing query masking...  [0.276s]
Opening temporary output file...  [0.013s]
Computing alignments...  [129.827s]
Deallocating reference...  [0.035s]
Loading reference sequences...  [15.637s]
Masking reference...  [18.653s]
Initializing temporary storage...  [0.007s]
Building reference histograms...  [7.644s]
Allocating buffers...  [0s]
Processing query block 1, reference block 8/15, shape 1/2.
Building reference seed array...  [6.58s]
Building query seed array...  [0.67s]
Computing hash join...  [9.807s]
Building seed filter...  [0.396s]
Searching alignments...  [14.226s]
Processing query block 1, reference block 8/15, shape 2/2.
Building reference seed array...  [6.005s]
Building query seed array...  [0.65s]
Computing hash join...  [9.734s]
Building seed filter...  [0.356s]
Searching alignments...  [13.424s]
Deallocating buffers...  [0.224s]
Clearing query masking...  [0.288s]
Opening temporary output file...  [0.001s]
Computing alignments...  [122.826s]
Deallocating reference...  [0.038s]
Loading reference sequences...  [15.719s]
Masking reference...  [19.497s]
Initializing temporary storage...  [0.006s]
Building reference histograms...  [7.031s]
Allocating buffers...  [0s]
Processing query block 1, reference block 9/15, shape 1/2.
Building reference seed array...  [6.56s]
Building query seed array...  [0.654s]
Computing hash join...  [9.782s]
Building seed filter...  [0.375s]
Searching alignments...  [15.469s]
Processing query block 1, reference block 9/15, shape 2/2.
Building reference seed array...  [5.988s]
Building query seed array...  [0.639s]
Computing hash join...  [9.624s]
Building seed filter...  [0.358s]
Searching alignments...  [13.457s]
Deallocating buffers...  [0.205s]
Clearing query masking...  [0.261s]
Opening temporary output file...  [0.001s]
Computing alignments...  [122.145s]
Deallocating reference...  [0.039s]
Loading reference sequences...  [15.765s]
Masking reference...  [18.647s]
Initializing temporary storage...  [0.006s]
Building reference histograms...  [7.609s]
Allocating buffers...  [0s]
Processing query block 1, reference block 10/15, shape 1/2.
Building reference seed array...  [6.502s]
Building query seed array...  [0.678s]
Computing hash join...  [9.827s]
Building seed filter...  [0.379s]
Searching alignments...  [14.417s]
Processing query block 1, reference block 10/15, shape 2/2.
Building reference seed array...  [6.103s]
Building query seed array...  [0.648s]
Computing hash join...  [9.671s]
Building seed filter...  [0.359s]
Searching alignments...  [13.595s]
Deallocating buffers...  [0.209s]
Clearing query masking...  [0.276s]
Opening temporary output file...  [0.002s]
Computing alignments...  [128.283s]
Deallocating reference...  [0.039s]
Loading reference sequences...  [15.697s]
Masking reference...  [18.66s]
Initializing temporary storage...  [0.011s]
Building reference histograms...  [7.058s]
Allocating buffers...  [0s]
Processing query block 1, reference block 11/15, shape 1/2.
Building reference seed array...  [6.597s]
Building query seed array...  [0.665s]
Computing hash join...  [9.806s]
Building seed filter...  [0.386s]
Searching alignments...  [14.283s]
Processing query block 1, reference block 11/15, shape 2/2.
Building reference seed array...  [6.003s]
Building query seed array...  [0.652s]
Computing hash join...  [9.761s]
Building seed filter...  [0.36s]
Searching alignments...  [13.867s]
Deallocating buffers...  [0.206s]
Clearing query masking...  [0.256s]
Opening temporary output file...  [0.002s]
Computing alignments...  [119.614s]
Deallocating reference...  [0.038s]
Loading reference sequences...  [15.715s]
Masking reference...  [19.251s]
Initializing temporary storage...  [0.01s]
Building reference histograms...  [7.594s]
Allocating buffers...  [0s]
Processing query block 1, reference block 12/15, shape 1/2.
Building reference seed array...  [6.636s]
Building query seed array...  [0.715s]
Computing hash join...  [9.874s]
Building seed filter...  [0.36s]
Searching alignments...  [14.158s]
Processing query block 1, reference block 12/15, shape 2/2.
Building reference seed array...  [6.075s]
Building query seed array...  [0.651s]
Computing hash join...  [9.733s]
Building seed filter...  [0.359s]
Searching alignments...  [14.69s]
Deallocating buffers...  [0.207s]
Clearing query masking...  [0.26s]
Opening temporary output file...  [0.001s]
Computing alignments...  [127.634s]
Deallocating reference...  [0.038s]
Loading reference sequences...  [15.429s]
Masking reference...  [18.624s]
Initializing temporary storage...  [0.014s]
Building reference histograms...  [7.047s]
Allocating buffers...  [0s]
Processing query block 1, reference block 13/15, shape 1/2.
Building reference seed array...  [6.723s]
Building query seed array...  [0.721s]
Computing hash join...  [9.826s]
Building seed filter...  [0.371s]
Searching alignments...  [14.327s]
Processing query block 1, reference block 13/15, shape 2/2.
Building reference seed array...  [6.085s]
Building query seed array...  [0.646s]
Computing hash join...  [9.718s]
Building seed filter...  [0.368s]
Searching alignments...  [13.485s]
Deallocating buffers...  [0.206s]
Clearing query masking...  [0.26s]
Opening temporary output file...  [0.001s]
Computing alignments...  [131.59s]
Deallocating reference...  [0.038s]
Loading reference sequences...  [19.489s]
Masking reference...  [19.47s]
Initializing temporary storage...  [0.009s]
Building reference histograms...  [7.654s]
Allocating buffers...  [0s]
Processing query block 1, reference block 14/15, shape 1/2.
Building reference seed array...  [6.586s]
Building query seed array...  [0.734s]
Computing hash join...  [9.882s]
Building seed filter...  [0.378s]
Searching alignments...  [15.63s]
Processing query block 1, reference block 14/15, shape 2/2.
Building reference seed array...  [6.309s]
Building query seed array...  [0.683s]
Computing hash join...  [9.804s]
Building seed filter...  [0.359s]
Searching alignments...  [15.173s]
Deallocating buffers...  [0.208s]
Clearing query masking...  [0.287s]
Opening temporary output file...  [0.001s]
Computing alignments...  [128.964s]
Deallocating reference...  [0.038s]
Loading reference sequences...  [5.713s]
Masking reference...  [4.708s]
Initializing temporary storage...  [0.01s]
Building reference histograms...  [1.814s]
Allocating buffers...  [0s]
Processing query block 1, reference block 15/15, shape 1/2.
Building reference seed array...  [1.604s]
Building query seed array...  [0.673s]
Computing hash join...  [3.038s]
Building seed filter...  [0.147s]
Searching alignments...  [4.116s]
Processing query block 1, reference block 15/15, shape 2/2.
Building reference seed array...  [1.552s]
Building query seed array...  [0.635s]
Computing hash join...  [3.03s]
Building seed filter...  [0.139s]
Searching alignments...  [4.09s]
Deallocating buffers...  [0.059s]
Clearing query masking...  [0.272s]
Opening temporary output file...  [0.001s]
Computing alignments...  [41.089s]
Deallocating reference...  [0.008s]
Loading reference sequences...  [0.188s]
Deallocating buffers...  [0.022s]
Joining output blocks...  [96.451s]
Deallocating queries...  [0.018s]
Loading query sequences...  [0s]
Closing the input file...  [0s]
Closing the output file...  [1.403s]
Closing the database file...  [0s]
Deallocating taxonomy...  [0s]
Total time = 3450.9s
Reported 7564746 pairwise alignments, 7564746 HSPs.
383473 queries aligned.
Logging program options...

Finished logging program options.


Logging system PATH.
Finished logging system PATH