[2019-06-11 09:53:01.367] [jointLog] [info] [Step 1 of 4] : counting k-mers
[2019-06-11 09:53:21.422] [jointLog] [info] Replaced 0 non-ATCG nucleotides
[2019-06-11 09:53:21.422] [jointLog] [info] Clipped poly-A tails from 423 transcripts
[2019-06-11 09:53:21.449] [jointLog] [info] Building rank-select dictionary and saving to disk
[2019-06-11 09:53:21.494] [jointLog] [info] done
[2019-06-11 09:53:21.495] [jointLog] [info] Writing sequence data to file . . . 
[2019-06-11 09:53:21.953] [jointLog] [info] done
[2019-06-11 09:53:21.988] [jointLog] [info] Building 32-bit suffix array (length of generalized text is 567,720,635)
[2019-06-11 09:53:22.913] [jointLog] [info] Building suffix array . . . 
[2019-06-11 10:00:19.871] [jointLog] [info] khash had 331,026,249 keys
[2019-06-11 10:00:19.871] [jointLog] [info] saving hash to disk . . . 
[2019-06-11 10:00:46.588] [jointLog] [info] done