[2018-03-11 15:22:32,398] multiqc [DEBUG ] No MultiQC config found: /home/sam/anaconda3/lib/python3.6/site-packages/multiqc_config.yaml [2018-03-11 15:22:32,399] multiqc [DEBUG ] No MultiQC config found: /home/sam/.multiqc_config.yaml [2018-03-11 15:22:32,399] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2018-03-11 15:22:32,399] multiqc [DEBUG ] Command used: /home/sam/anaconda3/bin/multiqc . [2018-03-11 15:22:33,014] multiqc [DEBUG ] Latest MultiQC version is v1.4 [2018-03-11 15:22:33,014] multiqc [INFO ] This is MultiQC v1.4 [2018-03-11 15:22:33,014] multiqc [DEBUG ] Command : /home/sam/anaconda3/bin/multiqc . [2018-03-11 15:22:33,014] multiqc [DEBUG ] Working dir : /mnt/data/coral_RNAseq_fastq/montipora/20180311_fastqc_trimming [2018-03-11 15:22:33,014] multiqc [INFO ] Template : default [2018-03-11 15:22:33,015] multiqc [INFO ] Searching '.' [2018-03-11 15:22:33,015] multiqc [DEBUG ] Analysing modules: afterqc, custom_content, conpair, peddy, methylQA, qualimap, preseq, quast, qorts, rna_seqc, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, picard, prokka, samblaster, samtools, bamtools, jellyfish, vcftools, bbmap, bismark, hicexplorer, hicup, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, leehom, adapterRemoval, cutadapt, flexbar, trimmomatic, skewer, sortmerna, biobloomtools, fastq_screen, fastqc, clusterflow, bcl2fastq, interop [2018-03-11 15:22:33,016] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmp00l4g33q [2018-03-11 15:22:33,075] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 4R041-L6-P01-AGTCAA-READ1-Sequences_fastqc.html [2018-03-11 15:22:33,082] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 4R041-L6-P01-AGTCAA-READ2-Sequences_fastqc.html [2018-03-11 15:22:33,084] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 4R041-L6-P02-CTTGTA-READ1-Sequences_fastqc.html [2018-03-11 15:22:33,085] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 4R041-L6-P02-CTTGTA-READ2-Sequences_fastqc.html [2018-03-11 15:22:33,085] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 4R041-L6-P03-GTTTCG-READ1-Sequences_fastqc.html [2018-03-11 15:22:33,086] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 4R041-L6-P03-GTTTCG-READ2-Sequences_fastqc.html [2018-03-11 15:22:33,086] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 4R041-L6-P04-ATCACG-READ1-Sequences_fastqc.html [2018-03-11 15:22:33,087] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 4R041-L6-P04-ATCACG-READ2-Sequences_fastqc.html [2018-03-11 15:22:33,087] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 4R041-L6-P05-TAGCTT-READ1-Sequences_fastqc.html [2018-03-11 15:22:33,088] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 4R041-L6-P05-TAGCTT-READ2-Sequences_fastqc.html [2018-03-11 15:22:33,088] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 4R041-L6-P06-AGTTCC-READ1-Sequences_fastqc.html [2018-03-11 15:22:33,089] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 4R041-L6-P06-AGTTCC-READ2-Sequences_fastqc.html [2018-03-11 15:22:33,089] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 4R041-L6-P07-ATGTCA-READ1-Sequences_fastqc.html [2018-03-11 15:22:33,090] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 4R041-L6-P07-ATGTCA-READ2-Sequences_fastqc.html [2018-03-11 15:22:33,090] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 4R041-L6-P08-ACTGAT-READ1-Sequences_fastqc.html [2018-03-11 15:22:33,091] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 4R041-L6-P08-ACTGAT-READ2-Sequences_fastqc.html [2018-03-11 15:22:33,091] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 4R041-L6-P09-GGCTAC-READ1-Sequences_fastqc.html [2018-03-11 15:22:33,092] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 4R041-L6-P09-GGCTAC-READ2-Sequences_fastqc.html [2018-03-11 15:22:33,093] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 4R041-L6-P10-GTCCGC-READ1-Sequences_fastqc.html [2018-03-11 15:22:33,094] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 4R041-L6-P10-GTCCGC-READ2-Sequences_fastqc.html [2018-03-11 15:22:33,094] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 4R041-L6-P11-GAGTGG-READ1-Sequences_fastqc.html [2018-03-11 15:22:33,095] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 4R041-L6-P11-GAGTGG-READ2-Sequences_fastqc.html [2018-03-11 15:22:33,095] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 4R041-L6-P12-GCCAAT-READ1-Sequences_fastqc.html [2018-03-11 15:22:33,096] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 4R041-L6-P12-GCCAAT-READ2-Sequences_fastqc.html [2018-03-11 15:22:33,096] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 4R041-L6-PrNotRecog-READ1-Sequences_fastqc.html [2018-03-11 15:22:33,097] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 4R041-L6-PrNotRecog-READ2-Sequences_fastqc.html [2018-03-11 15:22:54,684] multiqc [DEBUG ] No samples found: afterqc [2018-03-11 15:22:54,691] multiqc [DEBUG ] No samples found: custom_content [2018-03-11 15:22:54,696] multiqc [DEBUG ] No samples found: conpair [2018-03-11 15:22:54,700] multiqc [DEBUG ] No samples found: peddy [2018-03-11 15:22:54,704] multiqc [DEBUG ] No samples found: methylQA [2018-03-11 15:22:54,711] multiqc [DEBUG ] No samples found: qualimap [2018-03-11 15:22:54,715] multiqc [DEBUG ] No samples found: preseq [2018-03-11 15:22:54,719] multiqc [DEBUG ] No samples found: quast [2018-03-11 15:22:54,724] multiqc [DEBUG ] No samples found: qorts [2018-03-11 15:22:54,728] multiqc [DEBUG ] No samples found: rna_seqc [2018-03-11 15:22:54,733] multiqc [DEBUG ] No samples found: rsem [2018-03-11 15:22:54,742] multiqc [DEBUG ] No samples found: rseqc [2018-03-11 15:22:54,747] multiqc [DEBUG ] No samples found: busco [2018-03-11 15:22:54,752] multiqc [DEBUG ] No samples found: goleft_indexcov [2018-03-11 15:22:54,756] multiqc [DEBUG ] No samples found: disambiguate [2018-03-11 15:22:54,761] multiqc [DEBUG ] No samples found: supernova [2018-03-11 15:22:54,769] multiqc [DEBUG ] No samples found: deeptools [2018-03-11 15:22:54,773] multiqc [DEBUG ] No samples found: sargasso [2018-03-11 15:22:54,777] multiqc [DEBUG ] No samples found: verifybamid [2018-03-11 15:22:54,784] multiqc [DEBUG ] No samples found: homer [2018-03-11 15:22:54,792] multiqc [DEBUG ] No samples found: macs2 [2018-03-11 15:22:54,796] multiqc [DEBUG ] No samples found: theta2 [2018-03-11 15:22:54,800] multiqc [DEBUG ] No samples found: snpeff [2018-03-11 15:22:54,806] multiqc [DEBUG ] No samples found: gatk [2018-03-11 15:22:54,810] multiqc [DEBUG ] No samples found: htseq [2018-03-11 15:22:54,815] multiqc [DEBUG ] No samples found: bcftools [2018-03-11 15:22:54,819] multiqc [DEBUG ] No samples found: featureCounts [2018-03-11 15:22:54,830] multiqc [DEBUG ] No samples found: picard [2018-03-11 15:22:54,834] multiqc [DEBUG ] No samples found: prokka [2018-03-11 15:22:54,838] multiqc [DEBUG ] No samples found: samblaster [2018-03-11 15:22:54,845] multiqc [DEBUG ] No samples found: samtools [2018-03-11 15:22:54,850] multiqc [DEBUG ] No samples found: bamtools [2018-03-11 15:22:54,854] multiqc [DEBUG ] No samples found: jellyfish [2018-03-11 15:22:54,861] multiqc [DEBUG ] No samples found: vcftools [2018-03-11 15:22:54,871] multiqc [DEBUG ] No samples found: bbmap [2018-03-11 15:22:54,875] multiqc [DEBUG ] No samples found: bismark [2018-03-11 15:22:54,880] multiqc [DEBUG ] No samples found: hicexplorer [2018-03-11 15:22:54,884] multiqc [DEBUG ] No samples found: hicup [2018-03-11 15:22:54,888] multiqc [DEBUG ] No samples found: salmon [2018-03-11 15:22:54,892] multiqc [DEBUG ] No samples found: kallisto [2018-03-11 15:22:54,897] multiqc [DEBUG ] No samples found: slamdunk [2018-03-11 15:22:54,901] multiqc [DEBUG ] No samples found: star [2018-03-11 15:22:54,905] multiqc [DEBUG ] No samples found: hisat2 [2018-03-11 15:22:54,910] multiqc [DEBUG ] No samples found: tophat [2018-03-11 15:22:54,914] multiqc [DEBUG ] No samples found: bowtie2 [2018-03-11 15:22:54,919] multiqc [DEBUG ] No samples found: bowtie1 [2018-03-11 15:22:54,924] multiqc [DEBUG ] No samples found: leehom [2018-03-11 15:22:54,929] multiqc [DEBUG ] No samples found: adapterRemoval [2018-03-11 15:22:54,933] multiqc [DEBUG ] No samples found: cutadapt [2018-03-11 15:22:54,937] multiqc [DEBUG ] No samples found: flexbar [2018-03-11 15:22:54,941] multiqc [DEBUG ] No samples found: trimmomatic [2018-03-11 15:22:54,946] multiqc [DEBUG ] No samples found: skewer [2018-03-11 15:22:54,950] multiqc [DEBUG ] No samples found: sortmerna [2018-03-11 15:22:54,955] multiqc [DEBUG ] No samples found: biobloomtools [2018-03-11 15:22:54,959] multiqc [DEBUG ] No samples found: fastq_screen [2018-03-11 15:22:55,926] multiqc.modules.fastqc.fastqc [INFO ] Found 26 reports [2018-03-11 15:22:56,401] multiqc [DEBUG ] No samples found: clusterflow [2018-03-11 15:22:56,405] multiqc [DEBUG ] No samples found: bcl2fastq [2018-03-11 15:22:56,410] multiqc [DEBUG ] No samples found: interop [2018-03-11 15:22:56,452] multiqc [INFO ] Compressing plot data [2018-03-11 15:22:57,035] multiqc [INFO ] Report : multiqc_report.html [2018-03-11 15:22:57,036] multiqc [INFO ] Data : multiqc_data [2018-03-11 15:22:57,037] multiqc [DEBUG ] Moving data file from '/tmp/tmp00l4g33q/multiqc_data/multiqc_general_stats.txt' to '/mnt/data/coral_RNAseq_fastq/montipora/20180311_fastqc_trimming/multiqc_data' [2018-03-11 15:22:57,040] multiqc [DEBUG ] Moving data file from '/tmp/tmp00l4g33q/multiqc_data/multiqc_sources.txt' to '/mnt/data/coral_RNAseq_fastq/montipora/20180311_fastqc_trimming/multiqc_data' [2018-03-11 15:22:57,042] multiqc [DEBUG ] Moving data file from '/tmp/tmp00l4g33q/multiqc_data/multiqc_fastqc.txt' to '/mnt/data/coral_RNAseq_fastq/montipora/20180311_fastqc_trimming/multiqc_data' [2018-03-11 15:22:57,043] multiqc [DEBUG ] Moving data file from '/tmp/tmp00l4g33q/multiqc_data/multiqc_data.json' to '/mnt/data/coral_RNAseq_fastq/montipora/20180311_fastqc_trimming/multiqc_data' [2018-03-11 15:22:57,221] multiqc [INFO ] MultiQC complete