qPCR-graphs-7-24

library(tidyverse)

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qpcrm <- read.csv("../data/qPCR-data-7-24-1.csv", header = TRUE)

ggplot(data = qpcrm, mapping = aes(x = Subgroup, y = CqMean)) +   geom_boxplot() +
  facet_wrap('Target') +
  coord_cartesian(ylim = c(0, 45))

qpcrm %>%
  filter(Target == "Cg_18s(1408/9)") %>%
ggplot(mapping = aes(x = Subgroup, y = CqMean)) + 
  geom_boxplot()  +
  geom_jitter(aes(color = History), width = 0.1, alpha = 0.7)

qpcrm %>%
  filter(Target == "Cg_Actin(1170/1)") %>%
ggplot(mapping = aes(x = Subgroup, y = CqMean)) + 
  geom_boxplot()  +
  geom_jitter(aes(color = History), width = 0.1, alpha = 0.7)

qpcrm %>%
  filter(Target == "Cg_Def(1160/1)") %>%
ggplot(mapping = aes(x = Subgroup, y = CqMean)) + 
  geom_boxplot()  +
  geom_jitter(aes(color = History), width = 0.1, alpha = 0.7)

qpcrm %>%
  filter(Target == "IL-17_internal(256/7)") %>%
ggplot(mapping = aes(x = Subgroup, y = CqMean)) + 
  geom_boxplot()  +
  geom_jitter(aes(color = History), width = 0.1, alpha = 0.7)